1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAGgtagatctttgggggatattatgggggttgatccttgtgttttagtgctatttcgtgcgtaggaatcgaattaatgtgagatctatcgtctagaagtaat...
species | Oryza sativa |
transcript | LOC_Os10g37730.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAG ACTGCGTTGATGCACGCATGCCGGCATGGCCACTGGGAGGTGGTTCANATGEST: gi|88385475|gb|CI564135.1|CI564135
genomic: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAGgtagatcttt ... gtggatgaagACTGCGTTGATGCACGCATGCCGGCATGGCCACTGGGAGGTGGTTCAGATG
EST: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAG ACTGCGTTGATGCACGCATGCCGGCATGGCCACTGGGAGGTGGTTCAGATGEST: gi|88299379|gb|CI572331.1|CI572331
genomic: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAGgtagatcttt ... gtggatgaagACTGCGTTGATGCACGCATGCCGGCATGGCCACTGGGAGGTGGTTCAGATG
EST: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAG ACTGCGTTGATGCACGCATGCCGGCATGGCCACTGGGAGGTGGTTCAGATGEST: gi|88314988|gb|CI610047.1|CI610047
genomic: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAGgtagatcttt ... gtggatgaagACTGCGTTGATGCACGCATGCCGGCATGGCCACTGGGAGGTGGTTCAGATG
EST: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAG ACTGCGTTGATGCACGCATGCCGGCAEST: gi|88424663|gb|CI606462.1|CI606462
genomic: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAGgtagatcttt ... gtggatgaagACTGCGTTGATGCACGCATGCCGGCA
EST: TGTTGCTGGAGAAGGGCGCGGATGTGAAAGTACGGAACTACTGCGGGCAG AATGCGTTGATGCACGCATGCCGEST: gi|29616394|gb|CB621406.1|CB621406
genomic: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAGgtagatcttt ... gtggatgaagACTGCGTTGATGCACGCATGCCG
EST: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAG ACTGCGTTGATGCACGCATGCCGGCATGGCCACTGGGAGGTGGTTCAGATGEST: gi|29616393|gb|CB621405.1|CB621405
genomic: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAGgtagatcttt ... gtggatgaagACTGCGTTGATGCACGCATGCCGGCATGGCCACTGGGAGGTGGTTCAGATG
EST: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAG ACTGCGTTGATGCACGCATGCCGGCATGGCCACTGGGAGGTGGTTCAGATGEST: gi|88426126|gb|CI574009.1|CI574009
genomic: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAGgtagatcttt ... gtggatgaagACTGCGTTGATGCACGCATGCCGGCATGGCCACTGGGAGGTGGTTCAGATG
EST: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAG ACTGCGTTGATGCEST: gi|29641797|gb|CB646804.1|CB646804
genomic: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAGgtagatcttt ... gtggatgaagACTGCGTTGATGC
EST: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAG ACTGCGTTGATGCACGCATGCCGGCATGGCCACTGGGAGGTGGTTCAGATGEST: gi|29631475|gb|CB636484.1|CB636484
genomic: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAGgtagatcttt ... gtggatgaagACTGCGTTGATGCACGCATGCCGGCATGGCCACTGGGAGGTGGTTCAGATG
EST: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAG ACTGCGTTGATGCACGCATGCCGGCAT
genomic: TGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAGgtagatcttt ... gtggatgaagACTGCGTTGATGCACGCATGCCGGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAGgtagatctttgggggatattatgggggttgatccttgtgttttagtgctatttcgtgcgtaggaatcgaattaatgtgagatctatcgtctagaagtaat
- - - - - - - GCTGGA
- - - - - - - - TGGAGA
- - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggggat