1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cagaggctgagtttgatattacgggaaactgtgtcttggtatctcagattgctactttctagtatttcttaatgacgtttttttaatgtgaataatgcagGCTTGGACAGGAGCCTCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTAAGATTGCCTAATATCAAGTTTATTATTGTAACCCTTGGAGAAAAGGGAT
species | Oryza sativa |
transcript | LOC_Os08g45180.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCTTCTCAATTTCGCATCTTATGTTGTATGCTCTGCAAAATTTCCTCAG GCTTGGACAGGAGCCTCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTAEST: gi|29656464|gb|CB652739.1|CB652739
genomic: AGCTTCTCAATTTCGCATCTTATGTTGTATGCTCTGCAAAATTTCCTCAGgtaactaatt ... aataatgcagGCTTGGACAGGAGCCTCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTA
EST: AGCTTCTCAATTTCGCATCTTATGTTGTATGCTCTGCAAAATTTCCTCAG GCTTGGACAGGAGCCTCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTAEST: gi|29664341|gb|CB660616.1|CB660616
genomic: AGCTTCTCAATTTCGCATCTTATGTTGTATGCTCTGCAAAATTTCCTCAGgtaactaatt ... aataatgcagGCTTGGACAGGAGCCTCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTA
EST: AGCTTCTCAATTTCGCATCTTATGTTGTATGCTCTGCAAAATTTCCTCAG GCTTGGACAGGAGCCTCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTA
genomic: AGCTTCTCAATTTCGCATCTTATGTTGTATGCTCTGCAAAATTTCCTCAGgtaactaatt ... aataatgcagGCTTGGACAGGAGCCTCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTA
agattgctactttctagtatttcttaatgacgtttttttaatgtgaataatgcagGCTTGGACAGGAGCCTCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTAAGATTGCCTAATATCAAGTTTATTATTGTAACCCTTGGAGAAAAGGGAT
ttttaat putative branch site (score: 3)
tttttttaatgtgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagaggctgagtttgatattacgggaaactgtgtcttggtatctcagattgctactttctagtatttcttaatgacgtttttttaatgtgaataatgcagGCTTGGACAGGAGCCTCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTAAGATTGCCTAATATCAAGTTTATTATTGTAACCCTTGGAGAAAAGGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- gaggctg
- - - - - - - - - - - - - - - -tgtcttg