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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcctctcctctcctcttcactccctcgattcgctccccgcctctctctctctctctctctctctctctctcatctgcacgcatcacacccacaccctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTCCCCAACCCCGACGACAAGATCCGAAGCCTAACGCTCAAGGTCCAGGGAG

Basic information

species Oryza sativa
transcript LOC_Os08g45180.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58691834|gb|CK080521.1|CK080521
EST:     CACCGAACATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|88406865|gb|CI578393.1|CI578393
EST:     CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|58674585|gb|CK063272.1|CK063272
EST:     CTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|88410251|gb|CI575849.1|CI575849
EST:     CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|88403626|gb|CI575510.1|CI575510
EST:     CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|88423490|gb|CI579202.1|CI579202
EST:     CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|88447757|gb|CI579833.1|CI579833
EST:     CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGGGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|29672289|gb|CB668564.1|CB668564
EST:     CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|88413351|gb|CI581366.1|CI581366
EST:     CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|29659991|gb|CB656266.1|CB656266
EST:     CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCT-CCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|88409812|gb|CI571069.1|CI571069
EST:     CACCGAACATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGGGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|88729957|gb|CI753572.1|CI753572
EST:     CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|88422711|gb|CI573873.1|CI573873
EST:     CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|58690473|gb|CK079160.1|CK079160
EST:     CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|87023595|gb|CI286346.1|CI286346
EST:     CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTCGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|58611246|gb|CK038958.1|CK038958
EST:     CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|29656464|gb|CB652739.1|CB652739
EST:     CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
EST: gi|29664341|gb|CB660616.1|CB660616
EST:     CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTG                         CTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC
genomic: CACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGgtacgcctct ... accctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctctctctctctctctctctcatctgcacgcatcacacccacaccctcacagCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTCCCCAACCCCGACGACAAGATCCGAAGCCTAACGCTCAAGGTCCAGGGAG
                                            caccctc  CT-rich tract