1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttccggtacaataacttggttagttcgtgcaaacctgggccaaaccaatccacacaagtaaaattaatctaatatgatacatatgtgtgtgtgtttgcagGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCACAGATCCCCGCCTGGTTGCCTATTGACTCGAGGAACTGTAGTGTATCA
species | Oryza sativa |
transcript | LOC_Os08g45180.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTG GCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCEST: gi|86506029|gb|CI148662.1|CI148662
genomic: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGgtaagataac ... gtgtttgcagGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGC
EST: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTG GCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCEST: gi|86870825|gb|CI326656.1|CI326656
genomic: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGgtaagataac ... gtgtttgcagGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGC
EST: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTG GCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCEST: gi|86886989|gb|CI324410.1|CI324410
genomic: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGgtaagataac ... gtgtttgcagGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGC
EST: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTG GCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCEST: gi|86895280|gb|CI331219.1|CI331219
genomic: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGgtaagataac ... gtgtttgcagGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGC
EST: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTG GCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCEST: gi|86257369|gb|CI004187.1|CI004187
genomic: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGgtaagataac ... gtgtttgcagGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGC
EST: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTG GCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCEST: gi|86901267|gb|CI326110.1|CI326110
genomic: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGgtaagataac ... gtgtttgcagGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGC
EST: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTG GCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCEST: gi|86499585|gb|CI142218.1|CI142218
genomic: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGgtaagataac ... gtgtttgcagGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGC
EST: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTG GCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCEST: gi|86852922|gb|CI323231.1|CI323231
genomic: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGgtaagataac ... gtgtttgcagGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGC
EST: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTG GCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGC
genomic: TATGCTCTGGCATGCCGCCTGAGAAGATGCTGCCTTTTGCAGCTCAAGTGgtaagataac ... gtgtttgcagGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGC
caatccacacaagtaaaattaatctaatatgatacatatgtgtgtgtgtttgcagGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCACAGATCCCCGCCTGGTTGCCTATTGACTCGAGGAACTGTAGTGTATCA
atctaat putative branch site (score: 3)
aagtaaaattaatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccggtacaataacttggttagttcgtgcaaacctgggccaaaccaatccacacaagtaaaattaatctaatatgatacatatgtgtgtgtgtttgcagGCTGCTTGCGGGTGCAGGGGTTTAGGGGCTCGGACTGCTCTTCCCCATCGCACAGATCCCCGCCTGGTTGCCTATTGACTCGAGGAACTGTAGTGTATCA
- - - - caataac
- - - - - - - - - - - - -cgtgcaa
- - - - - - - - - - - - - - - - - ctgggcc
- - - - - - - - - - - - - - - - - - - - -aaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - cacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatgt