1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccgttcatttcacaaatcggatggtcatacaaaagtggcactctaattcttaaaatattcagcctgttattactactgtttaattccctctttctttcagGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAAGAGCTCACACAAGAAAACTTGTTTGCCGCTTTAGACGGTGCTGACATT
species | Oryza sativa |
transcript | LOC_Os08g45180.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGAC GAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAEST: gi|58674585|gb|CK063272.1|CK063272
genomic: GCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACgtaactcact ... tttctttcagGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGA
EST: GCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGAC GAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAEST: gi|29672289|gb|CB668564.1|CB668564
genomic: GCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACgtaactcact ... tttctttcagGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGA
EST: GCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGAC GAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAEST: gi|58690473|gb|CK079160.1|CK079160
genomic: GCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACgtaactcact ... tttctttcagGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGA
EST: --AG-G-AGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGAC GAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAEST: gi|29656464|gb|CB652739.1|CB652739
genomic: GCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACgtaactcact ... tttctttcagGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGA
EST: GCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGAC GAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAEST: gi|29664341|gb|CB660616.1|CB660616
genomic: GCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACgtaactcact ... tttctttcagGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGA
EST: GCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGAC GAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGA
genomic: GCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACgtaactcact ... tttctttcagGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGA
attcttaaaatattcagcctgttattactactgtttaattccctctttctttcagGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAAGAGCTCACACAAGAAAACTTGTTTGCCGCTTTAGACGGTGCTGACATT
ctgtttaattccctct CT-rich tract
taaaatattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgttcatttcacaaatcggatggtcatacaaaagtggcactctaattcttaaaatattcagcctgttattactactgtttaattccctctttctttcagGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAAGAGCTCACACAAGAAAACTTGTTTGCCGCTTTAGACGGTGCTGACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA