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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgcagcaaccaactatatatataaataaataaataatatatctgaagatagccaaagtttagctttcttatagttaattaattggcaattgttcattcagCTTGATCTGATCTGTGCGACCAAGGGAACATTGGATTGGATTCAGAAACTCAA

Basic information

species Oryza sativa
transcript LOC_Os08g44640.3
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14571374|gb|BI118742.1|BI118742
EST:     TCGACGAGCTTCTCAACCTCGGCCTCAACGTCACAATCTATAGCGGACAG                         CTTGATCTGATCTGTGCGACCAAGGGAACATTGGATTGGATTCAGAAACTC
genomic: TCGACGAGCTTCTCAACCTTGGCCTCAACGTCACAATCTATAGCGGACAGgtatcaaact ... gttcattcagCTTGATCTGATCTGTGCGACCAAGGGAACATTGGATTGGATTCAGAAACTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatagccaaagtttagctttcttatagttaattaattggcaattgttcattcagCTTGATCTGATCTGTGCGACCAAGGGAACATTGGATTGGATTCAGAAACTCAA
                              aattaat  putative branch site (score: 3)
                                              ttcattc  putative PPT
                  tttcttatagttaatt  TA-rich tract