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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agctaattaatcaacaaccattgctccctccaatgttatcgtagtagtacgtacgtagtatcatgcatcttgtgtagttaacaaacaagcgatattgcagGGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGACACCAACCTTAAACCCCGCCCATCCACCTGGCTCTCCAAGGCCGACCTCC

Basic information

species Oryza sativa
transcript LOC_Os08g44640.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117230642|gb|CT842176.1|CT842176
EST:     ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCG                         GGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC
genomic: ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCGgtaatcaatt ... gatattgcagGGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC
EST: gi|33683928|gb|CF312167.1|CF312167
EST:     ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCG                         GGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC
genomic: ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCGgtaatcaatt ... gatattgcagGGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC
EST: gi|58589213|gb|CF987521.1|CF987521
EST:     ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCG                         GGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC
genomic: ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCGgtaatcaatt ... gatattgcagGGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC
EST: gi|29623767|gb|CB628778.1|CB628778
EST:     ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCG                         GGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC
genomic: ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCGgtaatcaatt ... gatattgcagGGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC
EST: gi|58594128|gb|CF992436.1|CF992436
EST:     ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCG                         GGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC
genomic: ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCGgtaatcaatt ... gatattgcagGGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtacgtacgtagtatcatgcatcttgtgtagttaacaaacaagcgatattgcagGGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGACACCAACCTTAAACCCCGCCCATCCACCTGGCTCTCCAAGGCCGACCTCC
                              agttaac  putative branch site (score: 3)
                                ttaacaaa  TA-rich tract