1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...accaaaatggaaattgtcacggacatggtttgtgcttgcatttcttccctgttgtatcaggtatgtataagttcctacgttttgcatgggaatattgtagGTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTGCTCAATAAGTAAAGCTTCGTTTCCTGGATTTCTGTAACGCTTTATTCC
species | Oryza sativa |
transcript | LOC_Os08g31830.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACGAAAGCGTTCAGTTATATCAGTTCTCACGCTGGGCGAGAGCTCAGGG GTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTEST: gi|33659948|gb|CF290915.1|CF290915
genomic: AACGAAAGCGTTCAGTTATATCAGTTCTCACGCTGGGCGAGAGCTCAGGGgtaagatttt ... aatattgtagGTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTT
EST: AACGAAAGCGTTCAGTTATATCAGTTCTCACGCTGGGCGAGAGCTCAGGG GTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTEST: gi|88983378|gb|CI028614.1|CI028614
genomic: AACGAAAGCGTTCAGTTATATCAGTTCTCACGCTGGGCGAGAGCTCAGGGgtaagatttt ... aatattgtagGTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTT
EST: AACGAAAGCGTTCAGTTATATCAGTTCTCACGCTGGGCGAGAGCTCAGGG GTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTT
genomic: AACGAAAGCGTTCAGTTATATCAGTTCTCACGCTGGGCGAGAGCTCAGGGgtaagatttt ... aatattgtagGTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTT
tccctgttgtatcaggtatgtataagttcctacgttttgcatgggaatattgtagGTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTGCTCAATAAGTAAAGCTTCGTTTCCTGGATTTCTGTAACGCTTTATTCC
tatgtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaaaatggaaattgtcacggacatggtttgtgcttgcatttcttccctgttgtatcaggtatgtataagttcctacgttttgcatgggaatattgtagGTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTGCTCAATAAGTAAAGCTTCGTTTCCTGGATTTCTGTAACGCTTTATTCC
accaaaa
- - - - - - - - - - ggacatg
- - - - - - - - - - - - - - - - tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgg