1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatttcctgtggaaattcatgctgtattatatacttacttgtccttgcactataattgagtagcaccttactcccttctttatgttttgttttcttccagGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATATCCGGCAATATGACAGCAG
species | Oryza sativa |
transcript | LOC_Os08g31830.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCCCGTCGCTAACTGGGGCTTCGTCCTCGCG GGCTTAGTTGACATGAACAAGCCTCCTGAAATGATATCCGGCAATATGACAEST: gi|33659948|gb|CF290915.1|CF290915
genomic: GTCCCGTCGCTAACTGGGGCTTCGTCCTCGCGgtacgaacat ... tttcttccagGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATATCCGGCAATATGACA
EST: GGGGTCCCGTCGCTAACTGGGGCTTCGTCCTCGCG GGCTTAGTTGACATGAACAAGCCTCCTGAAATGATATCCGGCAATATGACAEST: gi|88983378|gb|CI028614.1|CI028614
genomic: GGGGTCCCGTCGCTAACTGGGGCTTCGTCCTCGCGgtacgaacat ... tttcttccagGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATATCCGGCAATATGACA
EST: GGACCACCCACTTCTGGGGTCCCGTCGCTAACTGGGGCTTCGTCCTCGCG GGCTTAGTTGACATGAACAAGCCTCCTGAAATGATATCCGGCAATATGACAEST: gi|427741|gb|D23876.1|D23876
genomic: GGACCACCCACTTCTGGGGTCCCGTCGCTAACTGGGGCTTCGTCCTCGCGgtacgaacat ... tttcttccagGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATATCCGGCAATATGACA
EST: GGACCACCCACTTCTGGGGTCCCGTCGCTAACTGGGGCTTCGTCCTCGCG GGCTTAGTTGACATGAACAAGCCTCCTGAAATGATATCCCGGCAATATGAC
genomic: GGACCACCCACTTCTGGGGTCCCGTCGCTAACTGGGGCTTCGTCCTCGCGgtacgaacat ... tttcttccagGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATATCC-GGCAATATGAC
tgcactataattgagtagcaccttactcccttctttatgttttgttttcttccagGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATATCCGGCAATATGACAGCAG
accttac putative branch site (score: 11)
caccttactcccttct CT-rich tract
tttatgttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttcctgtggaaattcatgctgtattatatacttacttgtccttgcactataattgagtagcaccttactcccttctttatgttttgttttcttccagGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATATCCGGCAATATGACAGCAG
- - -cctgtgg
- - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - - - - - - ccttgca