Sequence
atgc intronic sequence ATGC exonic sequenceCTGATGATTAGCTGTGTTGGGTTACCCAGGAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAgtaagggcctgaactcatcatcttctccagtgtgatttacatgcctggatgattatgctctacgacaatgcaaacatgttgatattgtctcattatcctgcgcataattgtgccgcgctgtag
Basic information
species | Oryza sativa |
transcript | LOC_Os08g16930.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58691488|gb|CK080175.1|CK080175EST: AGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCGA GTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTT
genomic: AGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAgtaagggcct ... cgcgctgtagGTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGATGATTAGCTGTGTTGGGTTACCCAGGAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAgtaagggcctgaactcatcatcttctccagtgtgatttacatgcctggatgattatgctctacgacaatgcaaacatgttgatattgtctcattatcctgcgcataattgtgccgcgctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG