1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgtcaaggctagcttgagattagtttttttttttaacacttccgataaattgtggctatccttttaaatgcctcaattgtttgtttcacttccatgcagATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATCAAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACC
species | Oryza sativa |
transcript | LOC_Os08g16880.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCTGATGAAGATGAGCACTAAGATTGTGTATTGTTGTTTTTATCCAGGG ATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTEST: gi|29686715|gb|CB682990.1|CB682990
genomic: CTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGAGgtattccttg ... ttccatgcagATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTT
EST: CTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGAG ATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTEST: gi|58031130|gb|CX728673.1|CX728673
genomic: CTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGAGgtattccttg ... ttccatgcagATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTT
EST: CTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGAG ATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTT
genomic: CTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGAGgtattccttg ... ttccatgcagATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTT
ataaattgtggctatccttttaaatgcctcaattgtttgtttcacttccatgcagATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATCAAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACC
tttgtttcacttcc CT-rich tract
ttttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtcaaggctagcttgagattagtttttttttttaacacttccgataaattgtggctatccttttaaatgcctcaattgtttgtttcacttccatgcagATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATCAAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttca