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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCGTTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGgcaggcagctctcgcggtgacccccttcccgttatgactgcgtgacccgcatcgcttctgaccaattgtttttattactattattattattgttgcag

Basic information

species Oryza sativa
transcript LOC_Os08g16880.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g16880.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G059618_T01 (Zea mays), 5'ss of exon 1
GCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCGTTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGgcaggca--gctctcgcggtgacccccttcccgttatgactgcgtga-cccgcatcgcttctgaccaattgtttttattactattattattattgttgcag
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GCGGCGGCGGCGGACCCCGACGCCGTGGCCGAGCTCCCACCCCTTCTCCGGGCGCGCGCTTTCCTTGCCTTGGCGCAGGCCGCGACCTCCCTTCTCGGAGgtaggcaccgcacttccggcg-----cttctccttctcgttgcataagcttaggttttttttttctgattattct-----ctttttacgggatttttgcag