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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatattggatactccccttggacttttatgtcacaatttcaacacttttctcagttggtacttttggtctttttgtagGCTGAAGATATTTCATTTTCGCATAGAGACGATCCTTATGAAATTGAAGAAGATGACTTTATAAGTTCAGGGATAAACGAGAACTCGTTTTCTAGCCTCA

Basic information

species Oryza sativa
transcript LOC_Os08g16670.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86828223|gb|CI276825.1|CI276825
EST:     ATGTGCTCCGTACATTGAAGACCTAAGTATTGAG                         GCTGAAGATATTTCATTTTCGCATAGAGACGATCCTTATGAAATTGAAGAA
genomic: ATGTGCTCCGTACATTGAAGACCTAAGTATTGAGgtaatattgg ... ctttttgtagGCTGAAGATATTTCATTTTCGCATAGAGACGATCCTTATGAAATTGAAGAA
EST: gi|87006930|gb|CI275238.1|CI275238
EST:     TATTTTCCTTACTGAGATGTGCTCCGTACATTGAAGACCTAAGTATTGAG                         GCTGAAGATATTTCATTTTCGCATAGAGACGATCCTTATGAAATTGAAGAA
genomic: TATTTTCCTTACTGAGATGTGCTCCGTACATTGAAGACCTAAGTATTGAGgtaatattgg ... ctttttgtagGCTGAAGATATTTCATTTTCGCATAGAGACGATCCTTATGAAATTGAAGAA
EST: gi|86859560|gb|CI278932.1|CI278932
EST:     TATTTTCCTTACTGAGATGTGCTCCGTACATTGAAGACCTAAGTATTGAG                         GCTGAAGATATTTCATTTTCGCATAGAGACGATCCTTATGAAATTGAAGAA
genomic: TATTTTCCTTACTGAGATGTGCTCCGTACATTGAAGACCTAAGTATTGAGgtaatattgg ... ctttttgtagGCTGAAGATATTTCATTTTCGCATAGAGACGATCCTTATGAAATTGAAGAA
EST: gi|86493815|gb|CI136448.1|CI136448
EST:     AAGACCTAAGTATTGAG                         GCTGAAGATATTTCATTTTCGCATAGAGACGATCCTTATGAAATTGAAGAA
genomic: AAGACCTAAGTATTGAGgtaatattgg ... ctttttgtagGCTGAAGATATTTCATTTTCGCATAGAGACGATCCTTATGAAATTGAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatgtcacaatttcaacacttttctcagttggtacttttggtctttttgtagGCTGAAGATATTTCATTTTCGCATAGAGACGATCCTTATGAAATTGAAGAAGATGACTTTATAAGTTCAGGGATAAACGAGAACTCGTTTTCTAGCCTCA
                                     cttttggtcttttt  CT-rich tract
           aatttcaa  TA-rich tract