Sequence
atgc intronic sequence ATGC exonic sequence...ggtaggctcacatgatcaacattaattcaaaaacatattctagaatatagtaaattgctgatcgaaatgttactcatcgacattctcttgttttgcacagCACGCCATCACCTCAAGTGGAATATTGA
Basic information
species | Oryza sativa |
transcript | LOC_Os08g12449.6 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58588503|gb|CF986811.1|CF986811EST: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCG CACGCCATCACCTCAAGTGGAATATTGA
genomic: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcaccc ... ttttgcacagCACGCCATCACCTCAAGTGGAATATTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatagtaaattgctgatcgaaatgttactcatcgacattctcttgttttgcacagCACGCCATCACCTCAAGTGGAATATTGA
tgctgat putative branch site (score: 3)
cattctcttgtttt putative PPT
aaatgtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtaggctcacatgatcaacattaattcaaaaacatattctagaatatagtaaattgctgatcgaaatgttactcatcgacattctcttgttttgcacagCACGCCATCACCTCAAGTGGAATATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - -acatgat
- - - - - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttact