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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcgtctcctctcttctaccgttccataatttcctcatcatgccgatcatcttctattttgacaccacgtcatttcatccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGCCGTCATCGGGTTCTCATCGTCGTTCCGACCGAACCGAACCACCCCAAGC

Basic information

species Oryza sativa
transcript LOC_Os08g12449.6
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58588503|gb|CF986811.1|CF986811
EST:     TTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCGTG                         CCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGTGCACTGGACGC
genomic: TTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCGTGgtcgtctcct ... tccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
EST: gi|88584998|gb|CI702597.1|CI702597
EST:     TTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCGTG                         CCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
genomic: TTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCGTGgtcgtctcct ... tccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcatcatgccgatcatcttctattttgacaccacgtcatttcatccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGCCGTCATCGGGTTCTCATCGTCGTTCCGACCGAACCGAACCACCCCAAGC
                        ttttgac  putative branch site (score: 3)
                                        tttcatcc  putative PPT
                   ttctatttt  TA-rich tract