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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagattatgccttccttaattatatgccttgcaagtagggtgttaggcttgtcttggtgcttgctgactcttgctgttgaattaaccttttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGGACTTGGAACTTAATGGGGGTAAACCCCTAGTCGGTGTGCTTGTGGTTTG

Basic information

species Oryza sativa
transcript LOC_Os08g12449.5
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88486666|gb|CI423937.1|CI423937
EST:     TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCG                         GTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGG
genomic: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcaccc ... ttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGG
EST: gi|218499715|gb|FG957052.1|FG957052
EST:     TCACCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCG                         GTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGG
genomic: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcaccc ... ttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGG
EST: gi|88486859|gb|CI424130.1|CI424130
EST:     TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCG                         GTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGG
genomic: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcaccc ... ttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggcttgtcttggtgcttgctgactcttgctgttgaattaaccttttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGGACTTGGAACTTAATGGGGGTAAACCCCTAGTCGGTGTGCTTGTGGTTTG
                                   aattaac  putative branch site (score: 2)
                                         ccttttgctt  CT-rich tract
                                ttgaattaa  TA-rich tract