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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCCAAGAAAACCCATCCAATGGCGCAGCGATCTTGGAGATCGACATCGTGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtcagtcaaattccatgcatgaatagcctccctagatagcttttgacctcttgcatgcaccgtactagtgactccccttacag

Basic information

species Oryza sativa
transcript LOC_Os08g12449.5
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88584998|gb|CI702597.1|CI702597
EST:     TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCG                         ATCGAGCAGCCGACGTCAT
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... ccccttacagATCGAGCAGCCGACGTCAT
EST: gi|88340116|gb|CI650563.1|CI650563
EST:     TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCG                         ATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATGCCGCCATGGAGCTT
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... ccccttacagATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATGCCGCCATGGAGCTT
EST: gi|88486666|gb|CI423937.1|CI423937
EST:     TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCG                         ATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATGCCGCCATGGAGCTT
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... ccccttacagATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATGCCGCCATGGAGCTT
EST: gi|218499715|gb|FG957052.1|FG957052
EST:     TCTTCTCCAACTCCATTCAACCGCTTCCATCATCGATTCCATTCTCTCCG                         ATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATGCCGCCATGGAGCTT
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... ccccttacagATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATGCCGCCATGGAGCTT