1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGCAAACCGAGGGGGAGAGCTCCGGCTTTTCTTTTCCATCTCGACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtctcctctcttctaccgttccataatttcctcatcatgccgatcatcttctattttgacaccacgtcatttcatccactgcag
species | Oryza sativa |
transcript | LOC_Os08g12449.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC CCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGCEST: gi|218496192|gb|FG947319.1|FG947319
genomic: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
EST: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC CCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGCEST: gi|218496359|gb|FG958513.1|FG958513
genomic: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
EST: CGCCATTGTGCC CCACGGGAACGCAGAGCTCACCGACGATGCTCTGGAGCGCGCACTGGACGCEST: gi|218482913|gb|FG954573.1|FG954573
genomic: CGCCATTGTGCCgtggtcgtct ... tccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
EST: CCTTGCCGCCGGCCGTGAAGACGACGTGCCGTTGCCATCGCCATTGTGCC GEST: gi|218482913|gb|FG954573.1|FG954573
genomic: CCTTGCCGCCGGCCGTGAAGACGACG-GCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: CCTTGCCGCCGGCCGTGAAGACGACGTGCCGTTGCCATCGCCATTGTGCC GEST: gi|218482913|gb|FG954573.1|FG954573
genomic: CCTTGCCGCCGGCCGTGAAGACGACG-GCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: CCTTGCCGCCGGCCGTGAAGACGACGTGCCGTTGCCATCGCCATTGTGCC GEST: gi|218482913|gb|FG954573.1|FG954573
genomic: CCTTGCCGCCGGCCGTGAAGACGACG-GCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: CCTTGCCGCCGGCCGTGAAGACGACGTGCCGTTGCCATCGCCATTGTGCC GEST: gi|5816512|gb|AU078109.1|AU078109
genomic: CCTTGCCGCCGGCCGTGAAGACGACG-GCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|5816512|gb|AU078109.1|AU078109
genomic: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|5816512|gb|AU078109.1|AU078109
genomic: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|5816512|gb|AU078109.1|AU078109
genomic: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|88584998|gb|CI702597.1|CI702597
genomic: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|88584998|gb|CI702597.1|CI702597
genomic: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|88584998|gb|CI702597.1|CI702597
genomic: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|88584998|gb|CI702597.1|CI702597
genomic: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|2312233|gb|C28388.1|C28388
genomic: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC CCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGN
genomic: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCAAACCGAGGGGGAGAGCTCCGGCTTTTCTTTTCCATCTCGACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtctcctctcttctaccgttccataatttcctcatcatgccgatcatcttctattttgacaccacgtcatttcatccactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA