1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtggtcgtctcctctcttctaccgttccataatttcctcatcatgccgatcatcttctattttgacaccacgtcatttcatccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGCCGTCATCGGGTTCTCATCGTCGTTCCGACCGAACCGAACCACCCCAAGC
species | Oryza sativa |
transcript | LOC_Os08g12449.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC CCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGCEST: gi|218496192|gb|FG947319.1|FG947319
genomic: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
EST: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC CCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGCEST: gi|218496359|gb|FG958513.1|FG958513
genomic: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
EST: CGCCATTGTGCC CCACGGGAACGCAGAGCTCACCGACGATGCTCTGGAGCGCGCACTGGACGCEST: gi|218482913|gb|FG954573.1|FG954573
genomic: CGCCATTGTGCCgtggtcgtct ... tccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
EST: CCTTGCCGCCGGCCGTGAAGACGACGTGCCGTTGCCATCGCCATTGTGCC GEST: gi|218482913|gb|FG954573.1|FG954573
genomic: CCTTGCCGCCGGCCGTGAAGACGACG-GCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: CCTTGCCGCCGGCCGTGAAGACGACGTGCCGTTGCCATCGCCATTGTGCC GEST: gi|218482913|gb|FG954573.1|FG954573
genomic: CCTTGCCGCCGGCCGTGAAGACGACG-GCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: CCTTGCCGCCGGCCGTGAAGACGACGTGCCGTTGCCATCGCCATTGTGCC GEST: gi|218482913|gb|FG954573.1|FG954573
genomic: CCTTGCCGCCGGCCGTGAAGACGACG-GCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: CCTTGCCGCCGGCCGTGAAGACGACGTGCCGTTGCCATCGCCATTGTGCC GEST: gi|5816512|gb|AU078109.1|AU078109
genomic: CCTTGCCGCCGGCCGTGAAGACGACG-GCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|5816512|gb|AU078109.1|AU078109
genomic: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|5816512|gb|AU078109.1|AU078109
genomic: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|5816512|gb|AU078109.1|AU078109
genomic: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|88584998|gb|CI702597.1|CI702597
genomic: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|88584998|gb|CI702597.1|CI702597
genomic: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|88584998|gb|CI702597.1|CI702597
genomic: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|88584998|gb|CI702597.1|CI702597
genomic: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC GEST: gi|2312233|gb|C28388.1|C28388
genomic: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcag-
EST: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC CCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGN
genomic: ACCTTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCgtggtcgtct ... tccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
cctcatcatgccgatcatcttctattttgacaccacgtcatttcatccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGCCGTCATCGGGTTCTCATCGTCGTTCCGACCGAACCGAACCACCCCAAGC
ttttgac putative branch site (score: 56)
tttcatcc putative PPT
ttctatttt TA-rich tract