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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTACTGTAGCTGATTTGAGGAGAAAGCATACAAGTTGGAAATGTGTAGAAGGCACACACTGGCATACTAGATTTACTCATCTGATAAATTATGGCGCTGgtaagctttctatagttcaagaaaatttcaagcttcagttttcataaagtataactgctattctttatttcaacattattgcag

Basic information

species Oryza sativa
transcript LOC_Os06g47210.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g47210.1 (Oryza sativa), 5'ss of exon 16
lower sequence: GRMZM2G450659_T02 (Zea mays), 5'ss of exon 9
TCTACTGTAGCTGATTTGAGGAGAAAGCATACAAGTTGGAAATGTGTAGAAGGCACACACTGGCATACTAGATTTACTCATCTGATAAATTATGGCGCTGgtaagctttcta-tagttcaagaaaatttcaa--gcttcagttttcataaagtataactgctattctttatttcaacattattgcag
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TCCACTGTTGCCGATTTGAGAAGGAAGCATACAAGTGGGAAATACGCAGAAGGCACACACTGGCATACACGATTTACTCATCTCGTAACCTACGGTGCTGgtaagtgttcgagctgtgctctagtccctgagttgcctcattcttcccttctcatagactacattaattatatta-cattattgcag