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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaagagataatctgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtag

Basic information

species Oryza sativa
transcript LOC_Os06g45820.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g45820.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G110408_T01 (Zea mays), 5'ss of exon 3
GATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaagagataatctgcatatttgctaactgtgcttttgtttattac-ttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtag--
    | ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |      |   |  |||| |  ||||| |   || | ||| | || | |||    |     || |  |   |   | ||  ||||  |     
----CTATTGACAGAATTGTGGCTGGTATGGAAGGGACTGTGATGACAGACGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTCGGGCATGCAATTTGCGGgtaagagatga---atcttcctcttaacagatcttttctcctttgccttgaacattagaatgtgattggtttaattttggtttcgattggtttctcagatatc

upper sequence: LOC_Os06g45820.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G087598_T02 (Zea mays), 5'ss of exon 2
GATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaagagata-atctgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgcaacta-ttcatatctggaaatgtattctttgtag--
    | ||||||||||| || |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||| | | |||||  |    |||| | | | ||   |  | ||   |||    |     || || |  | | ||   || |      ||   
----CTATTGACAGAATTGTAGCTGGTATGGAAGGGACCGTGATGACAGACGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGCGGgtaagagatggatcttcctctttgcaga----gcttctttcttttgtcttaacattggaatgtgattgggttaatttaggttttgattggtttctcagatattc

upper sequence: LOC_Os06g45820.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA08G09160.1 (Glycine max), 5'ss of exon 3
GATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaagagat---aatctgcatat-ttgctaactgtgcttttgtttattacttgcatatcaaa-attccgtgcaactattcatatctggaaatgtattctttgtag
    | ||||| || || |||||||| ||||||||||| ||||||||||||||||||||||||||| | || || || ||||||||||| ||||| |||||||||||||| ||     || |  ||| |   ||| |     |||     || | || |    |    ||  |   || ||   | |||  | ||      |||  || 
----CTATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGTCATGCTATTTGTGGgtaagaaatttggctcagtttatgtctttaagtaaatgttttaaggttgcatggaagcaaggtgttttgcctaattaggtaaatcatgtaaca----cttaata-

upper sequence: LOC_Os06g45820.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA09G05820.1 (Glycine max), 5'ss of exon 3
GATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga-gataatc----tgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtag
    | ||||| || || |||||||| |||||||||||||||||||||||||| |||||||||||  | || || || ||||||||||||||||| |||||||||||||   | ||||    || |  ||||      | | |  ||||||| | ||||| ||  ||     |||  | |    ||||      | ||     |||   
----CTATTGATAGGATTGTGGCTGGAATGGAAGGAACTGTGATGACAGATGGAAAGAGCAAAAGCTTAGTGGCATATCATGAAGTTGGGCATGCTATTTGTGGgtaagccaaaaatcagggtgtagttttgtctttcgagttaatgtttatga-ttgca-atggaagcaaggtgttattgcctatataaattcacgttacacttg---

upper sequence: LOC_Os06g45820.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA15G17070.1 (Glycine max), 5'ss of exon 3
GATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga-gataatctgcatatttgctaactgtgcttttgtt----------tattacttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtag-------------------------------------------------------------------------------
    | ||||| || || |||||||| ||||||||||| || ||||||||||| |||||||||||  | || || || ||||||||||||||||| ||||| |||||||   | |||| | | || ||     | || |     |          | ||| |||| |||  ||||||  ||  || | |  ||| |  || |  || |     |                                                                                
----CCATTGATAGGATTGTGGCTGGAATGGAAGGAACCGTAATGACAGATGGAAAGAGCAAAAGCTTAGTGGCATATCATGAAGTTGGGCATGCTATTTGCGGgtaagccaaaaatcagtaaatgtgtacgatatgatggcaatggaagcaaggtgtta-ttgcctatataaattc-atgttac-acttgtatataaaagta-atccagaaaaaaacaatggttctcattcagaagctgttttttgtaaacaattccaaaaagttgttcttaaatacctatctgtacttgcag

upper sequence: LOC_Os06g45820.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA05G26230.1 (Glycine max), 5'ss of exon 3
GATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaagagata-atctgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgcaac-tattcatatctggaaatgtattctttgtag
    | ||||| || || |||||||| ||||||||||| || |||||||||||||||||||||||  | || || || ||||||||||||||||| |||||||||||||| ||    |||    |||  |   |  |    |||||     ||||| ||  ||     |||     | || ||  ||    |||||    ||    
----CTATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGGAAGAGCAAAAGCTTAGTGGCATATCATGAAGTTGGGCATGCTATTTGTGGgtaagaaatttggctgttgtttttgtgtttaagtaaatgtttcaagattgca-atggaagcaatgtgttttgtctttatggctaattatgtaacacttaat-

upper sequence: LOC_Os06g45820.4 (Oryza sativa), 5'ss of exon 3
lower sequence: AT1G06430.1 (Arabidopsis thaliana), 5'ss of exon 3
GATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaagagataatctgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtag
    ||||||||||||| || ||||| ||||||||||| || |||||||||||||||||||||||  | |||||||||||||||||||| ||||| || ||||||||||  | ||||   | ||| | | |       | ||| | ||| |   |   | |||||       | | ||| |   || |                
----CAATTGACAGAATTGTAGCTGGCATGGAAGGAACAGTCATGACAGATGGGAAGAGCAAAAGCTTGGTTGCTTACCATGAAGTTGGCCATGCCATATGTGGgtaagtcagaatc---agattagatga-------tgtgtgtgtta-tcaaaagcctaaatttaagttcattgttcgttcttgcag---------------

upper sequence: LOC_Os06g45820.4 (Oryza sativa), 5'ss of exon 3
lower sequence: AT2G30950.1 (Arabidopsis thaliana), 5'ss of exon 3
GATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaagagataatctgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtag
    | ||||| ||||| || ||||| ||||||||||| |||||||| ||||| |||||||||||  | || ||||||||||||||||| |||||| | |||||||||| || ||    ||||||      ||||     ||| ||||| |   ||   ||| || | |  || |  | |  | |||       || |||  ||
----CCATTGATAGAATCGTTGCTGGCATGGAAGGAACAGTGATGACCGATGGCAAGAGCAAAAGCTTGGTAGCTTACCATGAAGTTGGTCATGCAGTGTGTGGgtaagtgagaa---acatattaaaagcctgt----ctgtatattattactatcaaaaacttactttaaagttataaactttgg-------ttttttacag

upper sequence: LOC_Os06g45820.4 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 3
GATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaagagataatctgcatatttgctaactgtgcttt-tgtttattacttgcatatcaaaatt--ccgtgcaactattcatatctggaaatgtattctttgtag
    ||||||| || || |||||||| ||||||||||| || ||||||||||| |||||||| ||||| || ||||||||||||||||| ||||| || |||||||||| || ||| | |     || |   | | ||     ||    |  |  |||||    ||      || |  | |  ||  |  |||   ||| ||     
----CAATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGAAAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaaatatcctgccatgtttcttattctggacattcgccatgttgatatccttcttgataaggccagcagttttacttcaaaactaatttttca---

upper sequence: LOC_Os06g45820.4 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S156_30V6.1 (Physcomitrella patens), 5'ss of exon 4
GATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggta-----------agagataatctgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgca---actattcatatctggaaatgtattctttgtag---------
    | ||||| ||||| |||||||||||||| || || || ||||| ||||| ||    || |||||||| || || ||||||||||| ||||| ||||| |||||           |      |  ||||  | | |   | ||    |||| | |        | | |   | | |||||   ||   | |    |   |||  |||  ||||           
----CCATTGATAGAATCGTGGCTGGTATGGAGGGGACAGTCATGACCGATGGCAAAGCAAAGAGTCTTGTCGCATATCATGAAGTTGGCCATGCTATTTGCGGgtactttttctttcaccatccaattgcaattgtacctgcagtttcattgtctctggaaaatttctaaggttacggtgcattgacctctaaggcttattaataaattaattgtgtgaggtgcag

upper sequence: LOC_Os06g45820.4 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S118_166V6.1 (Physcomitrella patens), 5'ss of exon 2
GATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaagagataatctgcatatttgctaactgtgcttt-tgtttattacttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtag-----------------------------------------------------------------------------------------
    ||||||||||||| || || || |||||||| || || ||||| || || |||||||| ||||||||||| ||||| ||||| || ||||| || || ||||||||   ||  || | | || |    ||| |  | || || ||  |   ||||   | ||   |  |  || |  |  ||     ||  ||||||||||                                                                                         
----CAATTGACAGAATCGTTGCCGGGATGGAAGGTACCGTCATGACGGACGGCAAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaaga---aacttgtacaatt-cgggatgtaccgtatggtttttgttcatatat-gcagttttttctatgtagtggtggcttttgctg-gttctttgtagttggaataactgtgaagtgatatcttcacttaggtcaaaaccatttgatttctgtttgctgaagtgtatgtactgtgtattctgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58691348|gb|CK080035.1|CK080035
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58691348|gb|CK080035.1|CK080035
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58691348|gb|CK080035.1|CK080035
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58691348|gb|CK080035.1|CK080035
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58691348|gb|CK080035.1|CK080035
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|29613925|gb|CB618938.1|CB618938
EST:     ACCATGAAGTTGGGCATGCAATTTGT                        
genomic: ACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29613925|gb|CB618938.1|CB618938
EST:     ACCATGAAGTTGGGCATGCAATTTGT                        
genomic: ACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29613925|gb|CB618938.1|CB618938
EST:     ACCATGAAGTTGGGCATGCAATTTGT                        
genomic: ACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29673467|gb|CB669742.1|CB669742
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29673467|gb|CB669742.1|CB669742
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29673467|gb|CB669742.1|CB669742
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|33381980|gb|CF197323.1|CF197323
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|33381980|gb|CF197323.1|CF197323
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|33381980|gb|CF197323.1|CF197323
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|33381980|gb|CF197323.1|CF197323
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|33381980|gb|CF197323.1|CF197323
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|29622525|gb|CB627536.1|CB627536
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29622525|gb|CB627536.1|CB627536
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29622525|gb|CB627536.1|CB627536
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29662978|gb|CB659253.1|CB659253
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29662978|gb|CB659253.1|CB659253
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29662978|gb|CB659253.1|CB659253
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|58609858|gb|CK037891.1|CK037891
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58609858|gb|CK037891.1|CK037891
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58609858|gb|CK037891.1|CK037891
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58609858|gb|CK037891.1|CK037891
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58609858|gb|CK037891.1|CK037891
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|29628598|gb|CB633609.1|CB633609
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29628598|gb|CB633609.1|CB633609
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29628598|gb|CB633609.1|CB633609
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29636881|gb|CB641890.1|CB641890
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29636881|gb|CB641890.1|CB641890
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29636881|gb|CB641890.1|CB641890
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29673465|gb|CB669740.1|CB669740
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29673465|gb|CB669740.1|CB669740
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29673465|gb|CB669740.1|CB669740
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|58693479|gb|CK082166.1|CK082166
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693479|gb|CK082166.1|CK082166
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693479|gb|CK082166.1|CK082166
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693479|gb|CK082166.1|CK082166
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693479|gb|CK082166.1|CK082166
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|11442742|gb|BF430645.1|BF430645
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|11442742|gb|BF430645.1|BF430645
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|11442742|gb|BF430645.1|BF430645
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29627170|gb|CB632181.1|CB632181
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29627170|gb|CB632181.1|CB632181
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29627170|gb|CB632181.1|CB632181
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|58681961|gb|CK070648.1|CK070648
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58681961|gb|CK070648.1|CK070648
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58681961|gb|CK070648.1|CK070648
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58681961|gb|CK070648.1|CK070648
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58681961|gb|CK070648.1|CK070648
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608816|gb|CK036849.1|CK036849
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608816|gb|CK036849.1|CK036849
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608816|gb|CK036849.1|CK036849
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608816|gb|CK036849.1|CK036849
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608816|gb|CK036849.1|CK036849
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|29617927|gb|CB622939.1|CB622939
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29617927|gb|CB622939.1|CB622939
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29617927|gb|CB622939.1|CB622939
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|11442703|gb|BF430606.1|BF430606
EST:     GGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: GGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|11442703|gb|BF430606.1|BF430606
EST:     GGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: GGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|11442703|gb|BF430606.1|BF430606
EST:     GGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: GGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29628517|gb|CB633528.1|CB633528
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29628517|gb|CB633528.1|CB633528
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29628517|gb|CB633528.1|CB633528
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|58693754|gb|CK082441.1|CK082441
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693754|gb|CK082441.1|CK082441
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693754|gb|CK082441.1|CK082441
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693754|gb|CK082441.1|CK082441
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693754|gb|CK082441.1|CK082441
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608103|gb|CK036136.1|CK036136
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608103|gb|CK036136.1|CK036136
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608103|gb|CK036136.1|CK036136
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608103|gb|CK036136.1|CK036136
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608103|gb|CK036136.1|CK036136
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|33796340|gb|CF324037.1|CF324037
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|33796340|gb|CF324037.1|CF324037
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|33796340|gb|CF324037.1|CF324037
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|14713849|gb|AU197811.1|AU197811
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|14713849|gb|AU197811.1|AU197811
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|14713849|gb|AU197811.1|AU197811
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29687052|gb|CB683327.1|CB683327
EST:     GTTGGGCATGCAATTTGT                        
genomic: GTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29687052|gb|CB683327.1|CB683327
EST:     GTTGGGCATGCAATTTGT                        
genomic: GTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29687052|gb|CB683327.1|CB683327
EST:     GTTGGGCATGCAATTTGT                        
genomic: GTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29629665|gb|CB634674.1|CB634674
EST:     AGTTGGGCATGCAATTTGT                        
genomic: AGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29629665|gb|CB634674.1|CB634674
EST:     AGTTGGGCATGCAATTTGT                        
genomic: AGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29629665|gb|CB634674.1|CB634674
EST:     AGTTGGGCATGCAATTTGT                        
genomic: AGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaagagataatctgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA