Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtaagagataatctgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGGGGTCAAGCTCGTGGTCTCACATGGTTCATTCCAATGGACGACCCAACG

Basic information

species Oryza sativa
transcript LOC_Os06g45820.4
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g45820.4 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G087598_T02 (Zea mays), 3'ss of exon 2
gtgggtaagagataatctgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgcaactattcatatc-tggaaatgtattctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGGGGTCAAGCTCGTGGTCTCACATGGTTCATTCCAATGGACGACCCAACG
 |    |     |   |||| | ||||       |    ||| | |  | || ||| ||||| ||   | ||   |||  |    |||||||    |||||| |||||||||||||||||||| || ||||||||||||||||| ||  | || |||||||||||||||||||| |||||||| || || ||||| |||||||| 
cttttgatttattggactgcctttttgtatgtcttttccttggtaacca-ttccatgtcaaatttatct-cattgatttgtggagtggaaat---ctctttgcagAACTTTGACGCCTGGCCATGATCCTGTCCAAAAGGTTACCTTAGTTCCAAGGGGTCAAGCTCGTGGTCTTACATGGTTTATCCCGATGGATGACCCAACA

upper sequence: LOC_Os06g45820.4 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G110408_T01 (Zea mays), 3'ss of exon 3
gtgggtaagagataatctgcatatttgctaactgtgcttttgtttattac--ttgcatatcaaaattccgtgcaact--attcatatctggaaatgtattctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGGGGTCAAGCTCGTGGTCTCACATGGTTCATTCCAATGGACGACCCAACG
     |      | ||  |  |   |  |    | | |||  ||  | ||  || |||  |||| ||      ||    |||||| | ||||||     |||||| ||||||||||| |||||||| || ||||||||||||||||| || ||||| |||||||||||||||||||| |||||||| || || ||||| |||||||| 
-----ttttgagttattggagtgccttttgtacgcgatttccttggtaaccattccatgccaaatttgtacctaatctcattcatttgtggaaac---ctctttgcagAACTTTGACACCTGGCCATGATCCTGTCCAAAAGGTTACCTTAATCCCAAGGGGTCAAGCTCGTGGTCTTACATGGTTTATCCCGATGGATGACCCAACA

upper sequence: LOC_Os06g45820.4 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S156_30V6.1 (Physcomitrella patens), 3'ss of exon 4
-------gtgggtaagagataatctgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgca---actattcatatctggaaatgtattctttgt---------agAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGGGGTCAAGCTCGTGGTCTCACATGGTTCATTCCAATGGACGACCCAACG
        |   | |      |  ||||  | | |   | ||    |||| | |        | | |   | | |||||   ||   | |    |   |||  |||  ||||         || || ||||| || ||||| ||  | || |||||||||||  |||| || ||||||||||||||||||||||| ||||||||||||   || ||||| || 
gtactttttctttcaccatccaattgcaattgtacctgcagtttcattgtctctggaaaatttctaaggttacggtgcattgacctctaaggcttattaataaattaattgtgtgaggtgcagGACCTTGACACCAGGCCATGATGCAGTGCAAAAGGTTACCCTGATTCCTAGGGGTCAAGCTCGTGGTCTCACCTGGTTCATTCCAGGCGAGGACCCCACC

upper sequence: LOC_Os06g45820.4 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S178_66V6.1 (Physcomitrella patens), 3'ss of exon 5
gtgggtaagagataatctgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGGGGTCAAGCTCGTGGTCTCACATGGTTCATTCCAATGGACGACCCAACG
    ||||    |   |   | ||      | ||| |   |   |||  || |     ||   || |    ||||| |||  |      || | | |   | |||||||| || || ||||||||  | || |||||||| ||| | |||||||||||||||||||| |||||||| |||||||| ||   ||| || || || 
----gtaatttcttcacaatacatgcatctattgtccaaattgatatccctggttcggcagggttgca---aactaatcagtt------atatttgcgacgcagAACTTTAACCCCAGGCCACGATGCAGTGCAAAAGGTGACTCTCATCCCGAGGGGTCAAGCTCGCGGTCTCACCTGGTTCATCCCTGGGGAAGATCCTACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58691348|gb|CK080035.1|CK080035
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58691348|gb|CK080035.1|CK080035
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58691348|gb|CK080035.1|CK080035
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58691348|gb|CK080035.1|CK080035
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58691348|gb|CK080035.1|CK080035
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|29613925|gb|CB618938.1|CB618938
EST:     ACCATGAAGTTGGGCATGCAATTTGT                        
genomic: ACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29613925|gb|CB618938.1|CB618938
EST:     ACCATGAAGTTGGGCATGCAATTTGT                        
genomic: ACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29613925|gb|CB618938.1|CB618938
EST:     ACCATGAAGTTGGGCATGCAATTTGT                        
genomic: ACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29673467|gb|CB669742.1|CB669742
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29673467|gb|CB669742.1|CB669742
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29673467|gb|CB669742.1|CB669742
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|33381980|gb|CF197323.1|CF197323
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|33381980|gb|CF197323.1|CF197323
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|33381980|gb|CF197323.1|CF197323
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|33381980|gb|CF197323.1|CF197323
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|33381980|gb|CF197323.1|CF197323
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|29622525|gb|CB627536.1|CB627536
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29622525|gb|CB627536.1|CB627536
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29622525|gb|CB627536.1|CB627536
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29662978|gb|CB659253.1|CB659253
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29662978|gb|CB659253.1|CB659253
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29662978|gb|CB659253.1|CB659253
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|58609858|gb|CK037891.1|CK037891
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58609858|gb|CK037891.1|CK037891
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58609858|gb|CK037891.1|CK037891
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58609858|gb|CK037891.1|CK037891
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58609858|gb|CK037891.1|CK037891
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|29628598|gb|CB633609.1|CB633609
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29628598|gb|CB633609.1|CB633609
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29628598|gb|CB633609.1|CB633609
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29636881|gb|CB641890.1|CB641890
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29636881|gb|CB641890.1|CB641890
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29636881|gb|CB641890.1|CB641890
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29673465|gb|CB669740.1|CB669740
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29673465|gb|CB669740.1|CB669740
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29673465|gb|CB669740.1|CB669740
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|58693479|gb|CK082166.1|CK082166
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693479|gb|CK082166.1|CK082166
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693479|gb|CK082166.1|CK082166
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693479|gb|CK082166.1|CK082166
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693479|gb|CK082166.1|CK082166
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|11442742|gb|BF430645.1|BF430645
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|11442742|gb|BF430645.1|BF430645
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|11442742|gb|BF430645.1|BF430645
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29627170|gb|CB632181.1|CB632181
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29627170|gb|CB632181.1|CB632181
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29627170|gb|CB632181.1|CB632181
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|58681961|gb|CK070648.1|CK070648
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58681961|gb|CK070648.1|CK070648
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58681961|gb|CK070648.1|CK070648
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58681961|gb|CK070648.1|CK070648
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58681961|gb|CK070648.1|CK070648
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608816|gb|CK036849.1|CK036849
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608816|gb|CK036849.1|CK036849
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608816|gb|CK036849.1|CK036849
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608816|gb|CK036849.1|CK036849
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608816|gb|CK036849.1|CK036849
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|29617927|gb|CB622939.1|CB622939
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29617927|gb|CB622939.1|CB622939
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29617927|gb|CB622939.1|CB622939
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|11442703|gb|BF430606.1|BF430606
EST:     GGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: GGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|11442703|gb|BF430606.1|BF430606
EST:     GGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: GGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|11442703|gb|BF430606.1|BF430606
EST:     GGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: GGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29628517|gb|CB633528.1|CB633528
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29628517|gb|CB633528.1|CB633528
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29628517|gb|CB633528.1|CB633528
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|58693754|gb|CK082441.1|CK082441
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693754|gb|CK082441.1|CK082441
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693754|gb|CK082441.1|CK082441
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693754|gb|CK082441.1|CK082441
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58693754|gb|CK082441.1|CK082441
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608103|gb|CK036136.1|CK036136
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608103|gb|CK036136.1|CK036136
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608103|gb|CK036136.1|CK036136
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608103|gb|CK036136.1|CK036136
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|58608103|gb|CK036136.1|CK036136
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTT                         G
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaaga ... ttctttgtag-
EST: gi|33796340|gb|CF324037.1|CF324037
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|33796340|gb|CF324037.1|CF324037
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|33796340|gb|CF324037.1|CF324037
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|14713849|gb|AU197811.1|AU197811
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|14713849|gb|AU197811.1|AU197811
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|14713849|gb|AU197811.1|AU197811
EST:     TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGT                        
genomic: TGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29687052|gb|CB683327.1|CB683327
EST:     GTTGGGCATGCAATTTGT                        
genomic: GTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29687052|gb|CB683327.1|CB683327
EST:     GTTGGGCATGCAATTTGT                        
genomic: GTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29687052|gb|CB683327.1|CB683327
EST:     GTTGGGCATGCAATTTGT                        
genomic: GTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29629665|gb|CB634674.1|CB634674
EST:     AGTTGGGCATGCAATTTGT                        
genomic: AGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29629665|gb|CB634674.1|CB634674
EST:     AGTTGGGCATGCAATTTGT                        
genomic: AGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta
EST: gi|29629665|gb|CB634674.1|CB634674
EST:     AGTTGGGCATGCAATTTGT                        
genomic: AGTTGGGCATGCAA-TT-Tgtgggtaaga ... ttctttgta


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGGGGTCAAGCTCGTGGTCTCACATGGTTCATTCCAATGGACGACCCAACG
                                           tattcttt  CT-rich tract
     atatcaaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgggtaagagataatctgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGGGGTCAAGCTCGTGGTCTCACATGGTTCATTCCAATGGACGACCCAACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT