1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgagttatctttgagtgttctcaaagttagaattttgttatcctcatatgtccaaaaccttgctaacattatggatataccttttaacttgttgcacagGTAAGTGTTGATGTTCCTGATGTACGCGGAAGGACAGAGATTCTTAAGGTGCACGGTAGCAACAAGAAGTTCGATACTGATGTCTCTCTTGAAGTCATAG
species | Oryza sativa |
transcript | LOC_Os06g45820.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAG GTAAGTGTTGATGTTCCTGATGTACGCGGAAGGACAGAGATTCTTAAGGTGEST: gi|58688540|gb|CK077227.1|CK077227
genomic: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAGgttagttttt ... tgttgcacagGTAAGTGTTGATGTTCCTGATGTACGCGGAAGGACAGAGATTCTTAAGGTG
EST: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAG GTAAGTGTTGATGTTCCTGATGTACGCGGAAGGACAGAGEST: gi|58692405|gb|CK081092.1|CK081092
genomic: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAGgttagttttt ... tgttgcacagGTAAGTGTTGATGTTCCTGATGTACGCGGAAGGACAGAG
EST: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAG GTAAGTGTTGATGTTCCTGATGTACGCGGAAGGACAGAGATTCTTAAGGTGEST: gi|29662977|gb|CB659252.1|CB659252
genomic: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAGgttagttttt ... tgttgcacagGTAAGTGTTGATGTTCCTGATGTACGCGGAAGGACAGAGATTCTTAAGGTG
EST: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAA GTAAGTGTTGATGTTCCTGATGTACGCGGAAGGACAGACATTCTTAAGGTGEST: gi|29613926|gb|CB618939.1|CB618939
genomic: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAGgttagttttt ... tgttgcacagGTAAGTGTTGATGTTCCTGATGTACGCGGAAGGACAGAGATTCTTAAGGTG
EST: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAG GTAAGTGTTGATGTTCCTGATGTAEST: gi|313079833|gb|HO213272.1|HO213272
genomic: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAGgttagttttt ... tgttgcacagGTAAGTGTTGATGTTCCTGATGTA
EST: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAG GTAAGTGTTGATEST: gi|58691808|gb|CK080495.1|CK080495
genomic: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAGgttagttttt ... tgttgcacagGTAAGTGTTGAT
EST: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAG GTAAGTGTTGATGTTCCTGATGTACGCGGAAGGACAGAGATTCTTAAGGTGEST: gi|25797955|gb|CA753916.1|CA753916
genomic: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAGgttagttttt ... tgttgcacagGTAAGTGTTGATGTTCCTGATGTACGCGGAAGGACAGAGATTCTTAAGGTG
EST: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAG GTAAGTGTTGATGTTCCTGATGTACGCGGAAGGACAGAGATTCTTAAGGTG
genomic: CTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAGgttagttttt ... tgttgcacagGTAAGTGTTGATGTTCCTGATGTACGCGGAAGGACAGAGATTCTTAAGGTG
catatgtccaaaaccttgctaacattatggatataccttttaacttgttgcacagGTAAGTGTTGATGTTCCTGATGTACGCGGAAGGACAGAGATTCTTAAGGTGCACGGTAGCAACAAGAAGTTCGATACTGATGTCTCTCTTGAAGTCATAG
taacattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgagttatctttgagtgttctcaaagttagaattttgttatcctcatatgtccaaaaccttgctaacattatggatataccttttaacttgttgcacagGTAAGTGTTGATGTTCCTGATGTACGCGGAAGGACAGAGATTCTTAAGGTGCACGGTAGCAACAAGAAGTTCGATACTGATGTCTCTCTTGAAGTCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG