1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGCATCATCACTTAACCAGCTATCGGACTCTGAGGTCTTGTTGCAGTGCTCCACCTCTCCAGCTGCCGAGCCACCACATTTTGTGGAAAATGAGAGAAGgtttgtgcccatatttttctacaaattaaacctgtcatcctgacagatgagagactgatgtggtttaagcttttctttataccatcttgatgtag
species | Oryza sativa |
transcript | LOC_Os06g41390.4 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCCACCTCTCCAGCTGCCGAGCCACCACATTTTGTGGAAAATGAGAGAAG GATATGGAGATACTTGATTGAAAATCCATATTGGCAAGACACATTTCCGAAEST: gi|86483884|gb|CI126517.1|CI126517
genomic: TCCACCTCTCCAGCTGCCGAGCCACCACATTTTGTGGAAAATGAGAGAAGgtttgtgccc ... cttgatgtagGATATGGAGATACTTGATTGAAAATCCATATTGGCAAGACACATTTCCGAA
EST: TCCACCTCTCCAGCTGCCGAGCCACCACATTTTGTGGAAAATGAGAGAAG GATATGGAGATACTTGATTGAAAATCCATATTGGCAAGACACATTTCCGAAEST: gi|29640143|gb|CB645152.1|CB645152
genomic: TCCACCTCTCCAGCTGCCGAGCCACCACATTTTGTGGAAAATGAGAGAAGgtttgtgccc ... cttgatgtagGATATGGAGATACTTGATTGAAAATCCATATTGGCAAGACACATTTCCGAA
EST: TCCACCTCTCCAGCTGCCGAGCCACCACATTTTGTGGAAAATGAGAGAAG GATATGGAGATACTTGATTGAAAATCCATATTGGCAAGACACATTTCCGAAEST: gi|86853168|gb|CI326263.1|CI326263
genomic: TCCACCTCTCCAGCTGCCGAGCCACCACATTTTGTGGAAAATGAGAGAAGgtttgtgccc ... cttgatgtagGATATGGAGATACTTGATTGAAAATCCATATTGGCAAGACACATTTCCGAA
EST: AGCCACCACATTTTGTGGAAAATGAGAGAAG GATATGGAGATACTTGATTGAAAATCCATATTGGCAAGACACATTTCCGAA
genomic: AGCCACCACATTTTGTGGAAAATGAGAGAAGgtttgtgccc ... cttgatgtagGATATGGAGATACTTGATTGAAAATCCATATTGGCAAGACACATTTCCGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCATCATCACTTAACCAGCTATCGGACTCTGAGGTCTTGTTGCAGTGCTCCACCTCTCCAGCTGCCGAGCCACCACATTTTGTGGAAAATGAGAGAAGgtttgtgcccatatttttctacaaattaaacctgtcatcctgacagatgagagactgatgtggtttaagcttttctttataccatcttgatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC