1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgcgcctacttggttgttggagggatttcttcccaccccgtctctcaccctcccgattcttgcagGGGAGCGGCGGGAGGGAGCTGGTGGCGGCGCTCATGGGGAACCCCGGGCTCCGCGCCGCATCGGAGAGGCTCAGGGCGGAGCCGGAGAGGCGGATCTCGT
species | Oryza sativa |
transcript | LOC_Os06g41390.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGAGCCCGTCTCCGCCTCCGCCTCCCCCACCTTCGGCTCCTCCCGCGGG GGGAGCGGCGGGAGGGAGCTGGTGGCGGCGCTCATGGGGAACCCCGGGCTCEST: gi|88362530|gb|CI623870.1|CI623870
genomic: GCGAGCCCGTCTCCGCCTCCGCCTCCCCCACCTTCGGCTCCTCCCGCGGGgtgcgcctac ... attcttgcagGGGAGCGGCGGGAGGGAGCTGGTGGCGGCGCTCATGGGGAACCCCGGGCTC
EST: GCGAGCCCGTCTCCGCCTCCGCCTCCCCCACCTTCGGCTCCTCCCGCGGG GGGAGCGGCGGGAGGGAGCTTGGTGGCGGCGCTCATGGGGAACCCCGGGCTEST: gi|88571489|gb|CI662862.1|CI662862
genomic: GCGAGCCCGTCTCCGCCTCCGCCTCCCCCACCTTCGGCTCCTCCCGCGGGgtgcgcctac ... attcttgcagGGGAGCGGCGGGAGGGAGCT-GGTGGCGGCGCTCATGGGGAACCCCGGGCT
EST: GCGAGCCCGTCTCCGCCTCCGCCTCCCCCACCTTCGGCTCCTCCCGCGGG GGGAGCGGCGGGAGGGAGCTGGTGGCGGCGCTCATGGGGAACCCCGGGCTCEST: gi|88336580|gb|CI656851.1|CI656851
genomic: GCGAGCCCGTCTCCGCCTCCGCCTCCCCCACCTTCGGCTCCTCCCGCGGGgtgcgcctac ... attcttgcagGGGAGCGGCGGGAGGGAGCTGGTGGCGGCGCTCATGGGGAACCCCGGGCTC
EST: GCGAGCCCGTCTCCGCCTCCGCCTCCCCCACCTTCGGCTCCTCCCGCGGG GGGAGCGGCGGGAGGGAGCTGGTGGCGGCGCTCATGGGGAACCCCGGGCTC
genomic: GCGAGCCCGTCTCCGCCTCCGCCTCCCCCACCTTCGGCTCCTCCCGCGGGgtgcgcctac ... attcttgcagGGGAGCGGCGGGAGGGAGCTGGTGGCGGCGCTCATGGGGAACCCCGGGCTC
tggttgttggagggatttcttcccaccccgtctctcaccctcccgattcttgcagGGGAGCGGCGGGAGGGAGCTGGTGGCGGCGCTCATGGGGAACCCCGGGCTCCGCGCCGCATCGGAGAGGCTCAGGGCGGAGCCGGAGAGGCGGATCTCGT
ctctcac putative branch site (score: 12)
tttcttcccaccccgt CT-rich tract
atttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcctacttggttgttggagggatttcttcccaccccgtctctcaccctcccgattcttgcagGGGAGCGGCGGGAGGGAGCTGGTGGCGGCGCTCATGGGGAACCCCGGGCTCCGCGCCGCATCGGAGAGGCTCAGGGCGGAGCCGGAGAGGCGGATCTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG