1 5' 3' | 2 5' 3' | 3 5' 3' |
ACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACGTGTCAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGgtgataatctcttcatcattacaccctccaatctattgttattaaatcatcagttatggatccctatcttttctggaaatatgatgattatataatttta...
species | Oryza sativa |
transcript | LOC_Os06g40630.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAG GTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCTEST: gi|86261306|gb|CI014373.1|CI014373
genomic: CAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGgtgataatct ... tgtttgctagGTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCT
EST: CAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAG GTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCTEST: gi|88519980|gb|CI447549.1|CI447549
genomic: CAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGgtgataatct ... tgtttgctagGTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCT
EST: CAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAG GTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCTEST: gi|27576650|gb|CA999344.1|CA999344
genomic: CAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGgtgataatct ... tgtttgctagGTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCT
EST: CAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAG GTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCTEST: gi|88839795|gb|CI015886.1|CI015886
genomic: CAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGgtgataatct ... tgtttgctagGTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCT
EST: CAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAG GTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGCATCTGCT
genomic: CAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGgtgataatct ... tgtttgctagGTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACGTGTCAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGgtgataatctcttcatcattacaccctccaatctattgttattaaatcatcagttatggatccctatcttttctggaaatatgatgattatataatttta
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