1 5' 3' | 2 5' 3' | 3 5' 3' |
...attctatcatggctttatatgcttatcttttgtcacactcatatatcaaaagaaatgtgtttgtgctgcattcactgaagctggtttaattttgctgcagAGGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACGTGTCAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTC
species | Oryza sativa |
transcript | LOC_Os06g40630.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGCGCTAAAAGGGCCGAAGAATCAGCTCTATCATATGATTTCCAAAGAG AGGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACEST: gi|88839795|gb|CI015886.1|CI015886
genomic: TTGCGCTAAAAGGGCCGAAGAATCAGCTCTATCATATGATTTCCAAAGAGgtactagtta ... tttgctgcagAGGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTAC
EST: TTGCGCTAAAAGGGCCGAAGAATCAGCTCTATCATATGATTTCCAAAGAG AGGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTAC
genomic: TTGCGCTAAAAGGGCCGAAGAATCAGCTCTATCATATGATTTCCAAAGAGgtactagtta ... tttgctgcagAGGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTAC
tcaaaagaaatgtgtttgtgctgcattcactgaagctggtttaattttgctgcagAGGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACGTGTCAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTC
gtttaat putative branch site (score: 5)
ttttgct CT-rich tract
tttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctatcatggctttatatgcttatcttttgtcacactcatatatcaaaagaaatgtgtttgtgctgcattcactgaagctggtttaattttgctgcagAGGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACGTGTCAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTC
- - - -catggct
- - - - - - - - -tatgctt
- - - - - - - - - - - - - cttttgt
- - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaagc