Sequence
atgc intronic sequence ATGC exonic sequenceTTTGGCTTAGCAAGATTTGTATACACTAGATCAAACGCACATCAATATACATCAACAAGCTTGGCTTGTCTAAAAGGATCTATTGGATATATTCCACCAGgtgagataagctaatttttaagttgataattctgtttaatgatacacgtggtgtctggtttctaattttatgacttctgtaaatctaaatgcag
Basic information
species | Oryza sativa |
transcript | LOC_Os06g38780.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29628572|gb|CB633583.1|CB633583EST: ATCAACAAGCTTGGCTTGTCTAAAAGGATCTATTGGATATATTCCACCAG AGTATGGCATGAGCAAAGATATCTCAACCAAGGGTGATGTCTACAGCTTCG
genomic: ATCAACAAGCTTGGCTTGTCTAAAAGGATCTATTGGATATATTCCACCAGgtgagataag ... ctaaatgcagAGTATGGCATGAGCAAAGATATCTCAACCAAGGGTGATGTCTACAGCTTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGGCTTAGCAAGATTTGTATACACTAGATCAAACGCACATCAATATACATCAACAAGCTTGGCTTGTCTAAAAGGATCTATTGGATATATTCCACCAGgtgagataagctaatttttaagttgataattctgtttaatgatacacgtggtgtctggtttctaattttatgacttctgtaaatctaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT