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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagataagctaatttttaagttgataattctgtttaatgatacacgtggtgtctggtttctaattttatgacttctgtaaatctaaatgcagAGTATGGCATGAGCAAAGATATCTCAACCAAGGGTGATGTCTACAGCTTCGGAATCCTTCTCTTAGAAATGGTAACAGGTAGTAGTCCTATTGATGAAAA

Basic information

species Oryza sativa
transcript LOC_Os06g38780.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29628572|gb|CB633583.1|CB633583
EST:     ATCAACAAGCTTGGCTTGTCTAAAAGGATCTATTGGATATATTCCACCAG                         AGTATGGCATGAGCAAAGATATCTCAACCAAGGGTGATGTCTACAGCTTCG
genomic: ATCAACAAGCTTGGCTTGTCTAAAAGGATCTATTGGATATATTCCACCAGgtgagataag ... ctaaatgcagAGTATGGCATGAGCAAAGATATCTCAACCAAGGGTGATGTCTACAGCTTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatacacgtggtgtctggtttctaattttatgacttctgtaaatctaaatgcagAGTATGGCATGAGCAAAGATATCTCAACCAAGGGTGATGTCTACAGCTTCGGAATCCTTCTCTTAGAAATGGTAACAGGTAGTAGTCCTATTGATGAAAA
                   tttctaattttatga  TA-rich tract