1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttttgtccatcaatccaaacattcctcatcactcgtgcaagcaacaaagctagctgtattaagtgcctaatttgctttgatggtttttataattgctcagGCATCAGGAAAACGAGTCGAGCTTGCTGTGAGGTGTCGAGGGGAGGCGTGCTGTGTCAGAAGGGGGGGGCCATCTGCAGTGACAGGACCAAGTACGCCTT
species | Oryza sativa |
transcript | LOC_Os06g36520.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATTCCTACAAGATCATTAGCGATATAATACAGCACCCGGCAAAATATG GCATCAGGAAAACGAGTCGAGCTTGCTGTGAGGTGTCGAGGGGAGGCGTGCEST: gi|88222251|gb|CI222207.1|CI222207
genomic: CAATTCCTACAAGATCATTAGCGATATAATACAGCACCCGGCAAAATATGgtaataatta ... aattgctcagGCATCAGGAAAACGAGTCGAGCTTGCTGTGAGGTGTCGAGGGGAGGCGTGC
EST: CAATTCCTACAAGATCATTAGCGATATAATACAGCACCCGGCAAAATATG GCATCAGGAAAACGAGTCGAGCTTGCTGTGAGGTGTCGAGGGGAGGCGTGC
genomic: CAATTCCTACAAGATCATTAGCGATATAATACAGCACCCGGCAAAATATGgtaataatta ... aattgctcagGCATCAGGAAAACGAGTCGAGCTTGCTGTGAGGTGTCGAGGGGAGGCGTGC
aaagctagctgtattaagtgcctaatttgctttgatggtttttataattgctcagGCATCAGGAAAACGAGTCGAGCTTGCTGTGAGGTGTCGAGGGGAGGCGTGCTGTGTCAGAAGGGGGGGGCCATCTGCAGTGACAGGACCAAGTACGCCTT
atggtttttataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgtccatcaatccaaacattcctcatcactcgtgcaagcaacaaagctagctgtattaagtgcctaatttgctttgatggtttttataattgctcagGCATCAGGAAAACGAGTCGAGCTTGCTGTGAGGTGTCGAGGGGAGGCGTGCTGTGTCAGAAGGGGGGGGCCATCTGCAGTGACAGGACCAAGTACGCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - gtccatc
- - - - - -aatccaa
- - - - - - - - - -cattcct
- - - - - - - - - - - - - - - - - -tgcaagc
- - - - - - - - - - - - - - - - - - - - - aacaaag
- - - - - - - - - - - - - - - - - - - - - - - - -ctagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgccta