1 5' 3' | 2 5' 3' | 3 5' 3' |
TCTTTCTCGTGACCTGCGCGGCGGCAATGTACACGATGCATGTGTACCGGGTGAGGAAGCATCTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTGgtgagctatttagcagctgcagagtgattaattcgaacacgatcgatgatattaatgttagtgacgttatacactgatgtgttcttcgttcttttttggtgccgttgcag
species | Oryza sativa |
transcript | LOC_Os06g36450.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGAGGAAGCATCTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTG GATCAAAGCTTCTTGATATGGCATCCCGTGATCGATAATGATGATTCATCAEST: gi|14191988|gb|AU184199.1|AU184199
genomic: GTGAGGAAGCATCTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTGgtgagctatt ... gccgttgcagGATCAAAGCTTCTTGATATGGCATCCCGTGATCGATAATGATGATTCATCA
EST: GTGAGGAAGCATNTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTG GATCAAAGCTTCTTGATATGGCATCCCGTGATCGATAATGATGATTCATCAEST: gi|38477350|gb|CF961483.1|CF961483
genomic: GTGAGGAAGCATCTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTGgtgagctatt ... gccgttgcagGATCAAAGCTTCTTGATATGGCATCCCGTGATCGATAATGATGATTCATCA
EST: GTGAGGAAGCATCTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTG GATCAAAGCTTCTTGATATGGCATCCCGTGATCGATAATGATGATTCATCAEST: gi|89189698|gb|CI049237.1|CI049237
genomic: GTGAGGAAGCATCTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTGgtgagctatt ... gccgttgcagGATCAAAGCTTCTTGATATGGCATCCCGTGATCGATAATGATGATTCATCA
EST: GTGAGGAAGCATCTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTG GATCAAAGCTTCTTGATATGGCATCCCGTGATCGATAATGATGATTCATCAEST: gi|88961008|gb|CI096411.1|CI096411
genomic: GTGAGGAAGCATCTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTGgtgagctatt ... gccgttgcagGATCAAAGCTTCTTGATATGGCATCCCGTGATCGATAATGATGATTCATCA
EST: GTGAGGAAGCATCTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTG GATCAAAGCTTCTTGATATGGCATCCCGTGATCGATAATGATGATTCATCAEST: gi|88226402|gb|CI226318.1|CI226318
genomic: GTGAGGAAGCATCTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTGgtgagctatt ... gccgttgcagGATCAAAGCTTCTTGATATGGCATCCCGTGATCGATAATGATGATTCATCA
EST: GTGAGGAAGCATCTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTG GATCAAAGCTTCTTGATATGGCATCCCGTGATCGATAATGATGATTCATCAEST: gi|88968343|gb|CI098585.1|CI098585
genomic: GTGAGGAAGCATCTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTGgtgagctatt ... gccgttgcagGATCAAAGCTTCTTGATATGGCATCCCGTGATCGATAATGATGATTCATCA
EST: GTGAGGAAGCATCTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTG GATCAAAGCTTCTTGATATGGCATCCCGTGATCGATAATGATGATTCATCA
genomic: GTGAGGAAGCATCTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTGgtgagctatt ... gccgttgcagGATCAAAGCTTCTTGATATGGCATCCCGTGATCGATAATGATGATTCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTTCTCGTGACCTGCGCGGCGGCAATGTACACGATGCATGTGTACCGGGTGAGGAAGCATCTGTTCCATCTCGACAGGATCCTGCCCAAGATGAACTGgtgagctatttagcagctgcagagtgattaattcgaacacgatcgatgatattaatgttagtgacgttatacactgatgtgttcttcgttcttttttggtgccgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG