1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggcttattgcgatattggaaagaacattgcattgaagtcgtcgttcacgtggttctaaggaatcgggtataatctttcccgtcgatttttttttcaacagGATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCGGCAATGTACACGATGCATGTGTACCGGGTGAGGAAGCATCTGTTCCATC
species | Oryza sativa |
transcript | LOC_Os06g36450.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTCGACCTGCTCACCTACGTCATGGGGATCATCGTCTCCGACCCCAGG GATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCGEST: gi|14191988|gb|AU184199.1|AU184199
genomic: TGTTCGACCTGCTCACCTACGTCATGGGCATCATCGTCTCCGACCCCAGGgtaccaacac ... ttttcaacagGATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCG
EST: TCCGACCCCAGG GATTTCGGCGAGCTGATCGTGCTGTCCTTTTTTNTCGTGACCTGCGCGGCGEST: gi|38477350|gb|CF961483.1|CF961483
genomic: TCCGACCCCAGGgtaccaacac ... ttttcaacagGATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCG
EST: TGTTCGACCTGCTCACCTACGTCATGGGCATCATCGTCTCCGA-CCCAGG GATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCGEST: gi|89189698|gb|CI049237.1|CI049237
genomic: TGTTCGACCTGCTCACCTACGTCATGGGCATCATCGTCTCCGACCCCAGGgtaccaacac ... ttttcaacagGATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCG
EST: TGTTCGACCTGCTCACCTACGTCATGGGCATCATCGTCTCCGACCCCAGG GATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCGEST: gi|88961008|gb|CI096411.1|CI096411
genomic: TGTTCGACCTGCTCACCTACGTCATGGGCATCATCGTCTCCGACCCCAGGgtaccaacac ... ttttcaacagGATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCG
EST: TGTTCGACCTGCTNACNTACGTCATGGGCATCATCGTCTCCGACCCCAGG GATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCGEST: gi|88226402|gb|CI226318.1|CI226318
genomic: TGTTCGACCTGCTCACCTACGTCATGGGCATCATCGTCTCCGACCCCAGGgtaccaacac ... ttttcaacagGATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCG
EST: TGTTCGACCTGCTCACCTACGTCATGGGCATCATCGTCTCCGACCCCAGG GATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCGEST: gi|88968343|gb|CI098585.1|CI098585
genomic: TGTTCGACCTGCTCACCTACGTCATGGGCATCATCGTCTCCGACCCCAGGgtaccaacac ... ttttcaacagGATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCG
EST: TGTTCGACCTGCTCACNTACGTCATGGGCATCATCGTCTCCGACCCCAGG GATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCG
genomic: TGTTCGACCTGCTCACCTACGTCATGGGCATCATCGTCTCCGACCCCAGGgtaccaacac ... ttttcaacagGATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCG
cacgtggttctaaggaatcgggtataatctttcccgtcgatttttttttcaacagGATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCGGCAATGTACACGATGCATGTGTACCGGGTGAGGAAGCATCTGTTCCATC
tctttcccgtcgattt CT-rich tract
atttttttttcaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcttattgcgatattggaaagaacattgcattgaagtcgtcgttcacgtggttctaaggaatcgggtataatctttcccgtcgatttttttttcaacagGATTTCGGCGAGCTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCGGCAATGTACACGATGCATGTGTACCGGGTGAGGAAGCATCTGTTCCATC
- - - - - - - - -gaaagaa
- - - - - - - - - - - - cattgca
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