1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaactattttgatctttgttatataaacccagtattttgtgcaagtgttttatttcctttacattagGCAGGCGTTGATGTATCTCATTTGGAAACAAGTGCATGCATTGGCGACCCAAAAACTTCAACAGATAATGAGGGGATCTTGTGTGAAGAGGAAGATTCCT
species | Oryza sativa |
transcript | LOC_Os06g29310.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAGATGAAGAG GCAGGCGTTGATGTATCTCGTTTGGAAACAAGTGCATGCATTGGCGANCCAEST: gi|88423791|gb|CI609822.1|CI609822
genomic: AAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAGATGAAGAGgtaactattt ... tttacattagGCAGGCGTTGATGTATCTCATTTGGAAACAAGTGCATGCATTGGCGACCCA
EST: AAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAGATGAAGAG GCAGGCGTTGATGTATCTCATTTGGAAACAAGTGCCTGCATTGGCGACCCEST: gi|88444969|gb|CI589447.1|CI589447
genomic: AAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAGATGAAGAGgtaactattt ... tttacattagGCAGGCGTTGATGTATCTCATTTGGAAACAAGTGCATGCATTGGCGACCC
EST: AAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAGATGAAGAG GCAGGCGTTGATGTAT
genomic: AAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAGATGAAGAGgtaactattt ... tttacattagGCAGGCGTTGATGTAT
tctttgttatataaacccagtattttgtgcaagtgttttatttcctttacattagGCAGGCGTTGATGTATCTCATTTGGAAACAAGTGCATGCATTGGCGACCCAAAAACTTCAACAGATAATGAGGGGATCTTGTGTGAAGAGGAAGATTCCT
tgttttatttccttt CT-rich tract
ttttatttccttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactattttgatctttgttatataaacccagtattttgtgcaagtgttttatttcctttacattagGCAGGCGTTGATGTATCTCATTTGGAAACAAGTGCATGCATTGGCGACCCAAAAACTTCAACAGATAATGAGGGGATCTTGTGTGAAGAGGAAGATTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA