1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atttttttaccatgtgtttcttttatagtgatatctacaattggttactattctatctgaattttattccatgccaacctgttggttttattaatgtcagTTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAGATGAAGAG
species | Oryza sativa |
transcript | LOC_Os06g29310.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGACAAATGCGCAAGGGGTAGTTCAATCAGGGATGTGCAGAATCATCANG TTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAEST: gi|88423791|gb|CI609822.1|CI609822
genomic: TGACAGATGCGCAAGGG-TAGTTCAATC-GGGATGTGCAGAATCATCA-Ggtatgggatt ... ttaatgtcagTTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATA
EST: TGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCAG TTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAGEST: gi|88444969|gb|CI589447.1|CI589447
genomic: TGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCAGgtatgggatt ... ttaatgtcagTTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAG
EST: TGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCAG TTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAG
genomic: TGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCAGgtatgggatt ... ttaatgtcagTTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAG
tactattctatctgaattttattccatgccaacctgttggttttattaatgtcagTTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAGATGAAGAG
tattaat putative branch site (score: 15)
ttttatt CT-rich tract
tatctgaattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttttttaccatgtgtttcttttatagtgatatctacaattggttactattctatctgaattttattccatgccaacctgttggttttattaatgtcagTTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAGATGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgttg