Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGACAACATGCAGTTCTGCGGCGCCATCAGAGGCGGCGTTGGCGGCGGCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggactaacctttcttcctcccctaaattctttcaattcagaggaattttaagattcttgagaaagtattttgaggtacctaaattttacattaa...

Basic information

species Oryza sativa
transcript LOC_Os06g09230.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89161564|gb|CI099536.1|CI099536
EST:     ACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACTATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: ACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86480177|gb|CI122810.1|CI122810
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|87016253|gb|CI271664.1|CI271664
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86597973|gb|CI278363.1|CI278363
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86480454|gb|CI123087.1|CI123087
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|89164288|gb|CI101376.1|CI101376
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86479199|gb|CI121832.1|CI121832
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86486081|gb|CI128714.1|CI128714
EST:     TCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: TCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86592999|gb|CI270556.1|CI270556
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86480184|gb|CI122817.1|CI122817
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86478611|gb|CI121244.1|CI121244
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|89163628|gb|CI100518.1|CI100518
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86480293|gb|CI122926.1|CI122926
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|87017855|gb|CI273877.1|CI273877
EST:     CGCTCACAAGCAGCA                         GAGTTCATGGGCGACTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: CGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86478403|gb|CI121036.1|CI121036
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86827391|gb|CI272807.1|CI272807
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|87014185|gb|CI273375.1|CI273375
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86480359|gb|CI122992.1|CI122992
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|87016197|gb|CI271608.1|CI271608
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|87027729|gb|CI274293.1|CI274293
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|88254794|gb|CI351422.1|CI351422
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86834222|gb|CI343982.1|CI343982
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86482511|gb|CI125144.1|CI125144
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|109712484|gb|CI105092.1|CI105092
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86482601|gb|CI125234.1|CI125234
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86481889|gb|CI124522.1|CI124522
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86437404|gb|CI119126.1|CI119126
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86832418|gb|CI341684.1|CI341684
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|87030995|gb|CI270143.1|CI270143
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86858258|gb|CI271137.1|CI271137
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|87037940|gb|CI192562.1|CI192562
EST:     GCTTGTGCAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGGGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86479759|gb|CI122392.1|CI122392
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86843589|gb|CI339621.1|CI339621
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86477520|gb|CI120153.1|CI120153
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|87030208|gb|CI270218.1|CI270218
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|87015129|gb|CI273527.1|CI273527
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86868593|gb|CI343165.1|CI343165
EST:     TCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: TCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86480114|gb|CI122747.1|CI122747
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86480962|gb|CI123595.1|CI123595
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86479366|gb|CI121999.1|CI121999
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|87027806|gb|CI274370.1|CI274370
EST:     CCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: CCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|88223564|gb|CI223413.1|CI223413
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|88198425|gb|CI198275.1|CI198275
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAATTCATGGGGGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86478785|gb|CI121418.1|CI121418
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86479694|gb|CI122327.1|CI122327
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|87015102|gb|CI273500.1|CI273500
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86480540|gb|CI123173.1|CI123173
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86485167|gb|CI127800.1|CI127800
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86481626|gb|CI124259.1|CI124259
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|109712331|gb|CI104939.1|CI104939
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|87021439|gb|CI274046.1|CI274046
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86479186|gb|CI121819.1|CI121819
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|89166684|gb|CI103970.1|CI103970
EST:     TCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: TCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86437375|gb|CI119097.1|CI119097
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86478574|gb|CI121207.1|CI121207
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86437553|gb|CI119275.1|CI119275
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86858622|gb|CI273151.1|CI273151
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86480181|gb|CI122814.1|CI122814
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86437903|gb|CI119823.1|CI119823
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|87014969|gb|CI271568.1|CI271568
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86480942|gb|CI123575.1|CI123575
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|88224346|gb|CI224195.1|CI224195
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86478809|gb|CI121442.1|CI121442
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86855855|gb|CI271074.1|CI271074
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACN
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGAC-
EST: gi|87029889|gb|CI274570.1|CI274570
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86478022|gb|CI120655.1|CI120655
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|87014767|gb|CI269474.1|CI269474
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|86827113|gb|CI270827.1|CI270827
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
EST: gi|87027422|gb|CI270097.1|CI270097
EST:     GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCA                         GAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG
genomic: GCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 62 (upstream exon), 54 (downstream exon)
Score: 7

CGAGGACAACATGCAGTTCTGCGGCGCCATCAGAGGCGGCGTTGGCGGCGGCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggac ... aaatttgcagGAGTTCATGGGCGATTCACAATACCCAAGATCGGTGTTCAGCTCAAGGACGGGTGAATCACCGATGCCTCTGAGAAGATCAAACGTTTGACACCTCGACC




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAGGACAACATGCAGTTCTGCGGCGCCATCAGAGGCGGCGTTGGCGGCGGCTTGTACAGCTCGTCCCTCCTCAGCACCCCCTCGCGCTCACAAGCAGCAgtaactggactaacctttcttcctcccctaaattctttcaattcagaggaattttaagattcttgagaaagtattttgaggtacctaaattttacattaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcccc