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ACTGTTGCGAGTGGAACAAGAACTGAAAATTGCAGAGGAAGCACGCATCTCTGCTGAGCAGGATGCCGCAGCTCAGAGATACGCTGTTAATGTGCTGCAGgttagtcagtcaacaagctcggtccatccttctgagatcatattttctctcttaaaatcacttactccttccggtcctaaatatttgacactcaggacaa...
species | Oryza sativa |
transcript | LOC_Os05g38950.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CTGCTGAGCAGGATGCCGCAGCTCAGAGATACGCTGTTAATGTGCTGCAG GAAAAGTATGAGGAAGCTATGGCTTCACTCGCGAAAATGGAGAACAGGGCTEST: gi|33795728|gb|CF323733.1|CF323733
genomic: CTGCTGAGCAGGATGCCGCAGCTCAGAGATACGCTGTTAATGTGCTGCAGgttagtcagt ... acatatgcagGAAAAGTATGAGGAAGCTATGGCTTCACTCGCGAAAATGGAGAACAGGGCT
EST: CTGCTGAGCAGGATGCCGCAGCTCAGAGATACGCTGTTAATGTGCTGCAG GAAAAGTATGAGGAAGCTATGGCTTCACTCGCGAAAATGGAGAACAGGGCTEST: gi|58680426|gb|CK069113.1|CK069113
genomic: CTGCTGAGCAGGATGCCGCAGCTCAGAGATACGCTGTTAATGTGCTGCAGgttagtcagt ... acatatgcagGAAAAGTATGAGGAAGCTATGGCTTCACTCGCGAAAATGGAGAACAGGGCT
EST: CTGCTGAGCAGGATGCCGCAGCTCAGAGATACGCTGTTAATGTGCTGCAG GAAAAGTATGAGGAAGCTATGGCTTCACTCGCGAAAATGGAGAACAGGGCT
genomic: CTGCTGAGCAGGATGCCGCAGCTCAGAGATACGCTGTTAATGTGCTGCAGgttagtcagt ... acatatgcagGAAAAGTATGAGGAAGCTATGGCTTCACTCGCGAAAATGGAGAACAGGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGTTGCGAGTGGAACAAGAACTGAAAATTGCAGAGGAAGCACGCATCTCTGCTGAGCAGGATGCCGCAGCTCAGAGATACGCTGTTAATGTGCTGCAGgttagtcagtcaacaagctcggtccatccttctgagatcatattttctctcttaaaatcacttactccttccggtcctaaatatttgacactcaggacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttc