1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...caaatcataaccaacaccagtatatcataattcatcctatgagctaaagatatctaattttctaacataagtgtgtttgaatgtccctcttctcttttagGTTGAGCAGTCGGAACAAGAATTGTCTGAACTAAGACAAACCCTATTGGATAAGCAGGAACAAGAGCAAGCAATGTGTCAG
species | Oryza sativa |
transcript | LOC_Os05g38950.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CATTGATGGAAATGGTCAAGCAAGATAATAGGCGGCAATTAAGTGCAAAG GTTGAGCAGTCGGAACAAGAATTGTCTGAACTAAGACAAACCCTATTGGACEST: gi|33795728|gb|CF323733.1|CF323733
genomic: CATTGATGGAAATGGTCAAGCAAGATAATAGGCGGCAATTAAGTGCAAAGgtatagccag ... tctcttttagGTTGAGCAGTCGGAACAAGAATTGTCTGAACTAAGACAAACCCTATTGGAT
EST: CATTGATGGAAATGGTCAAGCAAGATAATAGGCGGCAATTAAGTGCAAAG GTTGAGCAGTCGGAACAAGAATTGTCTGAACTAAGACAAACCCTATTGGATEST: gi|58680426|gb|CK069113.1|CK069113
genomic: CATTGATGGAAATGGTCAAGCAAGATAATAGGCGGCAATTAAGTGCAAAGgtatagccag ... tctcttttagGTTGAGCAGTCGGAACAAGAATTGTCTGAACTAAGACAAACCCTATTGGAT
EST: CATTGATGGAAATGGTCAAGCAAGATAATAGGCGGCAATTAAGTGCAAAG GTTGAGCAGTCGGAACAAGAATTGTCTGAACTAAGACAAACCCTATTGGAC
genomic: CATTGATGGAAATGGTCAAGCAAGATAATAGGCGGCAATTAAGTGCAAAGgtatagccag ... tctcttttagGTTGAGCAGTCGGAACAAGAATTGTCTGAACTAAGACAAACCCTATTGGAT
aaagatatctaattttctaacataagtgtgtttgaatgtccctcttctcttttagGTTGAGCAGTCGGAACAAGAATTGTCTGAACTAAGACAAACCCTATTGGATAAGCAGGAACAAGAGCAAGCAATGTGTCAG
ttctaac putative branch site (score: 8)
tgtccctcttctcttt putative PPT
taattttctaacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatcataaccaacaccagtatatcataattcatcctatgagctaaagatatctaattttctaacataagtgtgtttgaatgtccctcttctcttttagGTTGAGCAGTCGGAACAAGAATTGTCTGAACTAAGACAAACCCTATTGGATAAGCAGGAACAAGAGCAAGCAATGTGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - -taaccaa
- - - - - - - caccagt
- - - - - - - - - - - - - - - ttcatcc
- - - - - - - - - - - - - - - - - - - - -agctaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttga