1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttttatgctttttattcatgttttggagaaaatactttacgttttttttttcaataattacgtaatgcgttgatctaacttgaaattttcctgtttctagGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTGCCTGACGAAGTATTCCACAGAGCCCAGGGGATTCAGCTATGCAACATA
species | Oryza sativa |
transcript | LOC_Os05g25210.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATG GAAGACACTGTCAGCAAGAAAAGTGAGCGEST: gi|88828698|gb|CI073568.1|CI073568
genomic: TGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGgtaatttgat ... ctgtttctagGAAGACACTGTCAGCAAGAAAAGTGAGCG
EST: GCTCATGTTCGATG GAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTEST: gi|29662877|gb|CB659152.1|CB659152
genomic: GCTCATGTTCGATGgtaatttgat ... ctgtttctagGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGT
EST: TGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATG GAAGACACTGTCAGCNNNNNNNGTGAGCGCAACTAGGGGAGCTGCCTCTGTEST: gi|29688973|gb|CB685248.1|CB685248
genomic: TGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGgtaatttgat ... ctgtttctagGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGT
EST: TGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATG GAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTEST: gi|87007211|gb|CI277286.1|CI277286
genomic: TGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGgtaatttgat ... ctgtttctagGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGT
EST: TCATGTTCGATG GAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTEST: gi|32947947|gb|BP184519.1|BP184519
genomic: TCATGTTCGATGgtaatttgat ... ctgtttctagGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGT
EST: TGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATG GAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTEST: gi|87007359|gb|CI279030.1|CI279030
genomic: TGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGgtaatttgat ... ctgtttctagGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGT
EST: CTCATGTTCGATG GAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGTGGATCTGCCTCTGTEST: gi|87007151|gb|CI277226.1|CI277226
genomic: CTCATGTTCGATGgtaatttgat ... ctgtttctagGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGT
EST: TCATGTTCGATG GAAGACACTTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTG
genomic: TCATGTTCGATGgtaatttgat ... ctgtttctagGAAGACAC-TGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTG
ttttttcaataattacgtaatgcgttgatctaacttgaaattttcctgtttctagGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTGCCTGACGAAGTATTCCACAGAGCCCAGGGGATTCAGCTATGCAACATA
atctaac putative branch site (score: 15)
ttttcctgtttct putative PPT
aataattacgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttatgctttttattcatgttttggagaaaatactttacgttttttttttcaataattacgtaatgcgttgatctaacttgaaattttcctgtttctagGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTGCCTGACGAAGTATTCCACAGAGCCCAGGGGATTCAGCTATGCAACATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- -tatgctt
- - - - - - -attcatg
- - - - - - - - - - - - ggagaaaa