1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGgtacggatgtccttctctctttcctcctttattagtttccttgagttaatcttttcagaaactttggattcttgcatgttatctgtagcatgtgagttca...
species | Oryza sativa |
transcript | LOC_Os04g57320.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTG ATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTEST: gi|86860250|gb|CI323283.1|CI323283
genomic: CGATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGgtacggatgt ... cccgttgcagATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATT
EST: ATGAGTTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAAGTG ATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTEST: gi|25798460|gb|CA754421.1|CA754421
genomic: ATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGgtacggatgt ... cccgttgcagATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATT
EST: TTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTG ATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTEST: gi|87007304|gb|CI278975.1|CI278975
genomic: TTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGgtacggatgt ... cccgttgcagATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATT
EST: ATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTG ATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTEST: gi|29661403|gb|CB657678.1|CB657678
genomic: ATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGgtacggatgt ... cccgttgcagATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATT
EST: CAAGAGTCCCATGTTCTAGGAGACCTAAAATTG ATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAAAACATT
genomic: CAAGAGTCCCATGTTCTAGGAGACCTAAAATTGgtacggatgt ... cccgttgcagATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGgtacggatgtccttctctctttcctcctttattagtttccttgagttaatcttttcagaaactttggattcttgcatgttatctgtagcatgtgagttca
- - - - - - AGCAAG
- - - - - - - GCAAGA
- - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc