1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagctcttgctttggctttatttacacttgaagcgtttatgctcagtattaagcattaccatctgttccctttgcttacatggttgttttcccagATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTG
species | Oryza sativa |
transcript | LOC_Os04g57320.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGAGGATCTTGACTTATTCC ATGAGTTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAAGTGEST: gi|87007304|gb|CI278975.1|CI278975
genomic: ATGAGGATCTTTACTTATTCGgttagctctt ... gttttcccagATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTG
EST: TCCCGAGGCGGCTTTAAACTATTACCTGAATGAGGATCTTTACTTATTCG ATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTG
genomic: TCCCGAGGCGGCTTTAAACTATTACCTGAATGAGGATCTTTACTTATTCGgttagctctt ... gttttcccagATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTG
gctcagtattaagcattaccatctgttccctttgcttacatggttgttttcccagATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTG
tgcttac putative branch site (score: 10)
ttgttttccc putative PPT
tattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagctcttgctttggctttatttacacttgaagcgtttatgctcagtattaagcattaccatctgttccctttgcttacatggttgttttcccagATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA