1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtgtcttttgttacttataaagttctttttttctgtttgatttcattcagaaacttcactttggtcttcttgcagAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAG
species | Oryza sativa |
transcript | LOC_Os04g55690.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAGAAGTGCCATGGAATCCAAGAAGC AATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATEST: gi|88830359|gb|CI010559.1|CI010559
genomic: TAGAAGTGCCATGGAATCCAAGAAGCgtgagtgtct ... cttcttgcagAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCAT
EST: GAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGC AATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATEST: gi|86495735|gb|CI138368.1|CI138368
genomic: GAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCgtgagtgtct ... cttcttgcagAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCAT
EST: GAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGC AATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATEST: gi|29633805|gb|CB638814.1|CB638814
genomic: GAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCgtgagtgtct ... cttcttgcagAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCAT
EST: GAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGC AATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATEST: gi|86889076|gb|CI314692.1|CI314692
genomic: GAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCgtgagtgtct ... cttcttgcagAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCAT
EST: TTTATAGGAAGTGCCATGGAATCCAAGAAGC AATCTTACCTAGCAAATCTTCCCTTATATCCT-GAAGGACT-AACTACCATEST: gi|29634159|gb|CB639168.1|CB639168
genomic: TTTATA-GAAGTGCCATGGAATCCAAGAAGCgtgagtgtct ... cttcttgcagAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCAT
EST: GAAGTTCATGCAAGGTTCCTTTTATAGAAGTGCCATGGAATCCAAGAAGC AATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCAT
genomic: GAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCgtgagtgtct ... cttcttgcagAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCAT
agttctttttttctgtttgatttcattcagaaacttcactttggtcttcttgcagAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAG
gtttgat putative branch site (score: 16)
tcttcttgc putative PPT
tttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgtcttttgttacttataaagttctttttttctgtttgatttcattcagaaacttcactttggtcttcttgcagAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG