1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtttcttcctcccccagctaattctgttccctgcttgaatgattcagtagttcgcaattcttcttcagCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGGGTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCA
species | Oryza sativa |
transcript | LOC_Os04g55690.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCTCCTTCGAAC CAGCAGCACCAGGAAATGCACATCAGGGCGCCTGC-GCCGCGGCAGGATTGEST: gi|88425840|gb|CI571740.1|CI571740
genomic: GGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCTCCTTCGAACgtatgtttct ... tcttcttcagCAGCAGCAGCAGGAAATGCACATCAGGGCGC-TGCAGCCGCGGCAGGATTG
EST: GGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCTCCTTCGAAC CAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGGEST: gi|66928243|gb|CX115091.1|CX115091
genomic: GGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCTCCTTCGAACgtatgtttct ... tcttcttcagCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGG
EST: ACCATCGCCTCCTTCGAAC CAGCAGCAGCAGGAAATGCACATCAGTGCGCTGCAGCCGCGGCAGGATTGG
genomic: ACCATCGCCTCCTTCGAACgtatgtttct ... tcttcttcagCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGG
ccagctaattctgttccctgcttgaatgattcagtagttcgcaattcttcttcagCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGGGTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCA
agctaat putative branch site (score: 2)
ttcttcttc putative PPT
taattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttcttcctcccccagctaattctgttccctgcttgaatgattcagtagttcgcaattcttcttcagCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGGGTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA