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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtagctcactatacaactccactccacttcgctccatttgctgctgaatttctcgcgtttggtttcaccggtatccgtgagctgatgaattcttgatgtctgtgctgctagTTCTTGAGCAATGGTGATCCGGGGACAGCGGGAGGCCTGTCACTGACGATCGGCGCAGGCATGGCCGGGCACTGGCCTCCCCAGCAGCAGCAGGGGTGGG

Basic information

species Oryza sativa
transcript LOC_Os04g55560.3
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66918938|gb|CX105786.1|CX105786
EST:     CGGTCCTGCAGGTCACCCACCTGCCATTCAGTCCCAGGCATCATCACCAA                         TTCTTGAGCAATGGTGATCCGGGGACAGCGGGAGGCCTGTCACTGACGATC
genomic: CGGTCCTGCAGGTCACCCACCTGCCATTCAGTCCCAGGCATCATCACCAAgtgggtagct ... gtgctgctagTTCTTGAGCAATGGTGATCCGGGGACAGCGGGAGGCCTGTCACTGACGATC
EST: gi|29644662|gb|CB649669.1|CB649669
EST:     CGGTCCTGCAGGTCACCCACCTGCCATTCAGTCCCAGGCATCATCACCAA                         TTCTTGAGCAATGGTGATCCGGGGACAGCGGGAAGCCTGTCACTG
genomic: CGGTCCTGCAGGTCACCCACCTGCCATTCAGTCCCAGGCATCATCACCAAgtgggtagct ... gtgctgctagTTCTTGAGCAATGGTGATCCGGGGACAGCGGGAGGCCTGTCACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttggtttcaccggtatccgtgagctgatgaattcttgatgtctgtgctgctagTTCTTGAGCAATGGTGATCCGGGGACAGCGGGAGGCCTGTCACTGACGATCGGCGCAGGCATGGCCGGGCACTGGCCTCCCCAGCAGCAGCAGGGGTGGG
                                  tcttgat  putative branch site (score: 4)
                            atgaatt  TA-rich tract