1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CACCGGCGGCGGTGGCGGTGGCGCGGGCTCCGACCAGCGCGTCCCTATGGCGTTCGACCTTGACTGGCAAACGGCGGCGGCGAGGAGCACCAAAGCTAAGgtaaaaaaagaatggggactttgctttccgcatcagccgattgtcttctcatcacgtaataaaaaggcttaaaaattcctcgttttcttgtctag
species | Oryza sativa |
transcript | LOC_Os04g55560.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CGTTCGACCTTGACTGGCAAACGGCGGCGGCGAGGAGCACCAAAGCTAAG TTCGACCAGAACTCGAACCATCCCCAGATGCCTCCGGTCCTGCAGGTCACCEST: gi|29644662|gb|CB649669.1|CB649669
genomic: CGTTCGACCTTGACTGGCAAACGGCGGCGGCGAGGAGCACCAAAGCTAAGgtaaaaaaag ... tcttgtctagTTCGACCAGAACTCGAACCATCCCCAGATGCCTCCGGTCCTGCAGGTCACC
EST: CGTTCGACCTTGACTGGCAAACGGCGGCGGCGAGGAGCACCAAAGCTAAG TTCGACCAGAACTCGAACCATCCCCAGATGCCTCCGGTCCTGCAGGTCACC
genomic: CGTTCGACCTTGACTGGCAAACGGCGGCGGCGAGGAGCACCAAAGCTAAGgtaaaaaaag ... tcttgtctagTTCGACCAGAACTCGAACCATCCCCAGATGCCTCCGGTCCTGCAGGTCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACCGGCGGCGGTGGCGGTGGCGCGGGCTCCGACCAGCGCGTCCCTATGGCGTTCGACCTTGACTGGCAAACGGCGGCGGCGAGGAGCACCAAAGCTAAGgtaaaaaaagaatggggactttgctttccgcatcagccgattgtcttctcatcacgtaataaaaaggcttaaaaattcctcgttttcttgtctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA