1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagatgatactatcttcttccccttgtcattttccagttaaatggcaaactatatggtaatcaatacacgttttatgattggcatcttctaattcactgtacccatttcagGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGATCGATCCACTCATGGGCACCATATGCTCTTACGATGAAGTATGCAGATGCATCCAGGTTG
species | Oryza sativa |
transcript | LOC_Os04g54190.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGAACAGCTCATTTGTTGATGAAGAATGGTCAATGAATCTCTTGGGTTAC GCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGATCGATCCACTCEST: gi|86496206|gb|CI138839.1|CI138839
genomic: GGAACAGCTCATTTGTTGATGAAGAATGGTCAATGAATCTCTTGGGTTACgtaagatgat ... cccatttcagGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGATCGATCCACTC
EST: GGAACAGCTCATTTGTTGATGAAGAATGGTCAATGAATCTCTTGGGTTAC GCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGATCGATCCACTCEST: gi|86501042|gb|CI143675.1|CI143675
genomic: GGAACAGCTCATTTGTTGATGAAGAATGGTCAATGAATCTCTTGGGTTACgtaagatgat ... cccatttcagGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGATCGATCCACTC
EST: GGAACAGCTCATTTGTTGATGAAGAATGGTCAATGAATCTCTTGGGTTAC GCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGATCGATCCACTC
genomic: GGAACAGCTCATTTGTTGATGAAGAATGGTCAATGAATCTCTTGGGTTACgtaagatgat ... cccatttcagGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGATCGATCCACTC
gtaatcaatacacgttttatgattggcatcttctaattcactgtacccatttcagGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGATCGATCCACTCATGGGCACCATATGCTCTTACGATGAAGTATGCAGATGCATCCAGGTTG
ttctaat putative branch site (score: 4)
cccatttc putative PPT
ttttatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatgatactatcttcttccccttgtcattttccagttaaatggcaaactatatggtaatcaatacacgttttatgattggcatcttctaattcactgtacccatttcagGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGATCGATCCACTCATGGGCACCATATGCTCTTACGATGAAGTATGCAGATGCATCCAGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG