1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatggtcatttaaacattttatcattttatcctatcttgttaatatgaatgaaattgttgtttttactatctttgttctgacctggaattcaaaatcgtaatgctataagatcaatacctgaaccaacatagttgatattacttctagGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGGTGATAGTTCTATCCA
species | Oryza sativa |
transcript | LOC_Os04g54190.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAG GGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAAEST: gi|88338665|gb|CI644122.1|CI644122
genomic: ATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGgtatggtcat ... ttacttctagGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAA
EST: ATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAG GGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGEST: gi|88306438|gb|CI638225.1|CI638225
genomic: ATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGgtatggtcat ... ttacttctagGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGG
EST: ATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAG GGGGTACTACCTGATGGCCAGGAGATTGCTGTCEST: gi|88337125|gb|CI628211.1|CI628211
genomic: ATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGgtatggtcat ... ttacttctagGGGGTACTACCTGATGGCCAGGAGATTGCTGTC
EST: ATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAG GGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGAEST: gi|88361395|gb|CI626499.1|CI626499
genomic: ATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGgtatggtcat ... ttacttctagGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGA
EST: ATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAG GGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGAEST: gi|88327298|gb|CI645075.1|CI645075
genomic: ATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGgtatggtcat ... ttacttctagGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGA
EST: ATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAG GGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGAEST: gi|32948092|gb|BP184664.1|BP184664
genomic: ATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGgtatggtcat ... ttacttctagGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGA
EST: ATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAG GGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGA
genomic: ATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGgtatggtcat ... ttacttctagGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGA
aatcgtaatgctataagatcaatacctgaaccaacatagttgatattacttctagGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGGTGATAGTTCTATCCA
agttgat putative branch site (score: 2)
ttacttct CT-rich tract
ttgatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtcatttaaacattttatcattttatcctatcttgttaatatgaatgaaattgttgtttttactatctttgttctgacctggaattcaaaatcgtaatgctataagatcaatacctgaaccaacatagttgatattacttctagGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGGTGATAGTTCTATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC