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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGACCGCTTCGGCCGGAAGCCGCTCGCCATCGGCACCATGCTTCTCAGCGGCATCTCCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAGgtatacgtaatctccaatcatccaatcaaattcagctacgcgaacaaatttctgatcgatagagggcag

Basic information

species Oryza sativa
transcript LOC_Os04g53930.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86539607|gb|CI179813.1|CI179813
EST:     GGCATCTCCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAG                         GGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC
genomic: GGCATCTCCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAGgtatacgtaa ... tagagggcagGGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC
EST: gi|218490029|gb|FG965704.1|FG965704
EST:     GGCATCTCCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAG                         GGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC
genomic: GGCATCTCCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAGgtatacgtaa ... tagagggcagGGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC
EST: gi|29614298|gb|CB619311.1|CB619311
EST:     CCGGCGCCGGCGCCATGAG                         GGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC
genomic: CCGGCGCCGGCGCCATGAGgtatacgtaa ... tagagggcagGGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC
EST: gi|29614337|gb|CB619350.1|CB619350
EST:     GGCATCTCCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAG                         GGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC
genomic: GGCATCTCCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAGgtatacgtaa ... tagagggcagGGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC