Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86539607|gb|CI179813.1|CI179813EST: GGCATCTCCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAG GGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC
genomic: GGCATCTCCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAGgtatacgtaa ... tagagggcagGGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC
EST:
gi|218490029|gb|FG965704.1|FG965704EST: GGCATCTCCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAG GGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC
genomic: GGCATCTCCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAGgtatacgtaa ... tagagggcagGGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC
EST:
gi|29614298|gb|CB619311.1|CB619311EST: CCGGCGCCGGCGCCATGAG GGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC
genomic: CCGGCGCCGGCGCCATGAGgtatacgtaa ... tagagggcagGGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC
EST:
gi|29614337|gb|CB619350.1|CB619350EST: GGCATCTCCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAG GGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC
genomic: GGCATCTCCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAGgtatacgtaa ... tagagggcagGGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caatcatccaatcaaattcagctacgcgaacaaatttctgatcgatagagggcagGGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGACGTACAACCTGCTGTTCATCTACACGGCGGAGCTGTTCCCGACGGCGGTG
ttctgat putative branch site (score: 3)
aatcaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatacgtaatctccaatcatccaatcaaattcagctacgcgaacaaatttctgatcgatagagggcagGGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGACGTACAACCTGCTGTTCATCTACACGGCGGAGCTGTTCCCGACGGCGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT