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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCGCCTCCGGGGCGGTATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACGATCACCTTGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatccaggacaaggagggtattccaccagaccagcagcggctcatcttcgctggcaagcagcttgaggacggccgcacccttgctgactataaca...

Basic information

species Oryza sativa
transcript LOC_Os04g53620.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88248272|gb|CI248121.1|CI248121
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88985707|gb|CI016416.1|CI016416
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88295369|gb|CI527732.1|CI527732
EST:     ATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: ATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88518988|gb|CI446642.1|CI446642
EST:     ACCATCACTCTT-GAGGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: ACGATCAC-CTTGGA-GGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88842289|gb|CI081545.1|CI081545
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACTATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88528034|gb|CI456236.1|CI456236
EST:     TGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATTCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATT
genomic: TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|86539779|gb|CI179985.1|CI179985
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88515263|gb|CI442917.1|CI442917
EST:     GACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88375775|gb|CI528079.1|CI528079
EST:     TCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: TCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88829318|gb|CI074188.1|CI074188
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|86540906|gb|CI181112.1|CI181112
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88478978|gb|CI416249.1|CI416249
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88829159|gb|CI074029.1|CI074029
EST:     TGGAGGTGGAGTCCTCTGACACGATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|86540928|gb|CI181134.1|CI181134
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88479815|gb|CI417086.1|CI417086
EST:     GTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88960515|gb|CI006476.1|CI006476
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88514055|gb|CI441561.1|CI441561
EST:     GGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|428925|gb|D25081.1|D25081
EST:     GACGATCACCTTGGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAG                         GGCCAAGATCCA
genomic: GACGATCACCTTGG-AGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagG-CCAAGATCCA
EST: gi|88531592|gb|CI458688.1|CI458688
EST:     TGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88298257|gb|CI558662.1|CI558662
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATT
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88466525|gb|CI532332.1|CI532332
EST:     TGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATG
genomic: TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88991296|gb|CI108683.1|CI108683
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|86252028|gb|CI055765.1|CI055765
EST:     AGACGATCACCTTGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: AGACGATCACCTTGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88502923|gb|CI430429.1|CI430429
EST:     TGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88482833|gb|CI420104.1|CI420104
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88490114|gb|CI427386.1|CI427386
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88472315|gb|CI409586.1|CI409586
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|10931083|gb|AU161357.1|AU161357
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|33661623|gb|CF292590.1|CF292590
EST:     GACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88383687|gb|CI545838.1|CI545838
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88375670|gb|CI525764.1|CI525764
EST:     CGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: CGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88257125|gb|CI359513.1|CI359513
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88467029|gb|CI539825.1|CI539825
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88488058|gb|CI425329.1|CI425329
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88836487|gb|CI078384.1|CI078384
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACGATGGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|86430817|gb|CI083240.1|CI083240
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88444346|gb|CI555063.1|CI555063
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATT
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88220207|gb|CI219767.1|CI219767
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88443082|gb|CI546654.1|CI546654
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAAGGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|109712333|gb|CI104941.1|CI104941
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCTCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|14192075|gb|AU184286.1|AU184286
EST:     AGACGATCACCTTGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAG                         GCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAGCAGCGGCTCATC
genomic: AGACGATCACCTTGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88488971|gb|CI426242.1|CI426242
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88281959|gb|CI403355.1|CI403355
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88516168|gb|CI443822.1|CI443822
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATGCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCCCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88507436|gb|CI434942.1|CI434942
EST:     TGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88487943|gb|CI425214.1|CI425214
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88845086|gb|CI084011.1|CI084011
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88507350|gb|CI434856.1|CI434856
EST:     CCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: CCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88907905|gb|CI090501.1|CI090501
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCCAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88531504|gb|CI459983.1|CI459983
EST:     TGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88292152|gb|CI534946.1|CI534946
EST:     GAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|94362998|gb|CI053159.1|CI053159
EST:     GGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|88962789|gb|CI023889.1|CI023889
EST:     GACCATCA-CTCTGGAGGTTGAGTCCTCTGACACCATCGACGACGTGAAG                         GCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
genomic: GACGATCACCT-TGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATC
EST: gi|33661622|gb|CF292589.1|CF292589
EST:     AGACCATCACCTTGGAGGTTGAGTTCTCCGATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATG
genomic: AGACCATCACCTTGGAGGTTGAGTTCTCCGATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 149

CCTGCGCCTCCGGGGCGGTATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACGATCACCTTGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatcc ... caacgtgaagGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCCGACTATAACA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGCGCCTCCGGGGCGGTATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACGATCACCTTGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGgccaagatccaggacaaggagggtattccaccagaccagcagcggctcatcttcgctggcaagcagcttgaggacggccgcacccttgctgactataaca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgctggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cggccgc