Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgagctgacagtaccgatatcgtaggatctggtgccaacttattctccagctgcttttttttacctatgttaattccaatcctttcttgcctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTTCTCCGATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGG

Basic information

species Oryza sativa
transcript LOC_Os04g53620.4
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|568820|gb|D39669.1|D39669
EST:     CGAAGGGTAGGGGGAGCGAAG-TTTNGCNTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CGAAGGGGAGGGGGAGCGAAGCTTT-GCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88308684|gb|CI653571.1|CI653571
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88338237|gb|CI655426.1|CI655426
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|33800605|gb|CF326172.1|CF326172
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|58593816|gb|CF992124.1|CF992124
EST:     CCG-AGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88324741|gb|CI657609.1|CI657609
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|33688985|gb|CF317224.1|CF317224
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAG--ATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|86829877|gb|CI288561.1|CI288561
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88376767|gb|CI639092.1|CI639092
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88574913|gb|CI666682.1|CI666682
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|33796206|gb|CF323969.1|CF323969
EST:     CGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|87011397|gb|CI289667.1|CI289667
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|33662814|gb|CF293781.1|CF293781
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88729019|gb|CI752529.1|CI752529
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88765487|gb|CI774581.1|CI774581
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88744410|gb|CI767770.1|CI767770
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88574215|gb|CI665984.1|CI665984
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88761501|gb|CI771057.1|CI771057
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88726314|gb|CI749969.1|CI749969
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|3758972|gb|C96671.1|C96671
EST:     GCGAA-CTTTGCGTNTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: GCGAAGCTTTGCGT-TCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88335820|gb|CI644039.1|CI644039
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|10930985|gb|AU161259.1|AU161259
EST:     TTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: TTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|86830826|gb|CI293804.1|CI293804
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88333605|gb|CI656677.1|CI656677
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88358021|gb|CI650757.1|CI650757
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88335781|gb|CI647137.1|CI647137
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88407860|gb|CI588889.1|CI588889
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88720218|gb|CI743517.1|CI743517
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|14192392|gb|AU184603.1|AU184603
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88332570|gb|CI651730.1|CI651730
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|5003197|gb|AU068306.1|AU068306
EST:     GGAGCGAA--TTTNGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: GGAGCGAAGCTTT-GCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|86888716|gb|CI305784.1|CI305784
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|58682708|gb|CK071395.1|CK071395
EST:     AGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: AGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|87017607|gb|CI289740.1|CI289740
EST:     GAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: GAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|86887446|gb|CI294080.1|CI294080
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88412823|gb|CI576087.1|CI576087
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88340172|gb|CI652521.1|CI652521
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|14713554|gb|AU197551.1|AU197551
EST:     CGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88739063|gb|CI762571.1|CI762571
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88729864|gb|CI753085.1|CI753085
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|58680940|gb|CK069627.1|CK069627
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88722556|gb|CI746066.1|CI746066
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88401902|gb|CI591229.1|CI591229
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|38478134|gb|CF962267.1|CF962267
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGAGCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|33666246|gb|CF297213.1|CF297213
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|13806685|gb|AU181631.1|AU181631
EST:     GCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: GCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|325494018|gb|JG458542.1|JG458542
EST:     CCGAAGGGGAGGGGGAGCGAAGTTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGAACATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88761687|gb|CI771243.1|CI771243
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|33683740|gb|CF311979.1|CF311979
EST:     CCGAA-GGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88733487|gb|CI756664.1|CI756664
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|33689594|gb|CF317833.1|CF317833
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88328353|gb|CI651366.1|CI651366
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88722045|gb|CI745372.1|CI745372
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88573220|gb|CI664791.1|CI664791
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88743704|gb|CI767212.1|CI767212
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|4880172|gb|AU064471.1|AU064471
EST:     GGGGGAGCGAAG-TTTNGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: GGGGGAGCGAAGCTTT-GCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88357981|gb|CI650717.1|CI650717
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88310571|gb|CI659361.1|CI659361
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|428792|gb|D24948.1|D24948
EST:     GGGGGAGCGAAG-TTATNGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: GGGGGAGCGAAGCTT-T-GCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|33661622|gb|CF292589.1|CF292589
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         GTGCAGATATTCGTTAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|88315697|gb|CI617170.1|CI617170
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|3768751|gb|AU032778.1|AU032778
EST:     GAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: GAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
EST: gi|33795721|gb|CF323730.1|CF323730
EST:     CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAG                         ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT
genomic: CCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 61 (upstream exon), 75 (downstream exon)
Score: 345

TCGCATAGCGAGTCGAATCGACCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCTCGTCAAGgtaactaatc ... cctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTTCTCCGATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccagctgcttttttttacctatgttaattccaatcctttcttgcctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTTCTCCGATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGG
                       tgttaat  putative branch site (score: 345)
                             ttccaatcctttcttg  CT-rich tract
          ttttttttacctatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgagctgacagtaccgatatcgtaggatctggtgccaacttattctccagctgcttttttttacctatgttaattccaatcctttcttgcctcttccagATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTTCTCCGATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGG

- - gctgaca
- - - - - - - - - - - - - - - tggtgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcttg